ggKbase home page

scnpilot_solids2_trim150_scaffold_428

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_428_trna_1
unknown

Not on your lists

15..98
DNA (84bp)
transferRNA Leu
scnpilot_solids2_trim150_scaffold_428_1
unknown

Not on your lists

214..516
DNA (303bp) protein (101aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_428_2
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

513..1616
DNA (1104bp) protein (368aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J2N3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK00076.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
bacteriophage integrase
scnpilot_solids2_trim150_scaffold_428_3
unknown

Not on your lists

comp(1605..1844)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037F0D7E
scnpilot_solids2_trim150_scaffold_428_4
unknown

Not on your lists

comp(1855..2664)
DNA (810bp) protein (270aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_428_5
unknown

Not on your lists

comp(2697..2981)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035DF7B2
scnpilot_solids2_trim150_scaffold_428_6
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2983..3810)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037ED173
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF53783.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
scnpilot_solids2_trim150_scaffold_428_7
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4049..4912)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036632A7
Conjugative transposon protein TraN {ECO:0000313|EMBL:KGO93678.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_8
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4950..6242)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000361463C
Strain DSM 12611 Contig03, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54337.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_9
unknown

Not on your lists

comp(6260..6643)
DNA (384bp) protein (128aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_428_10
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6647..7264)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003825A16
Conjugal transfer protein {ECO:0000313|EMBL:KFF16585.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_11
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7312..8550)
DNA (1239bp) protein (413aa)
TraJ family protein conjugative transposon n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJT0_ZUNPS
Conjugal transfer protein TraJ {ECO:0000313|EMBL:KGO80811.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
TraJ family protein conjugative transposon
scnpilot_solids2_trim150_scaffold_428_12
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8656..9309)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036D8325
Uncharacterized protein {ECO:0000313|EMBL:KGO80810.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_13
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9293..9937)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000372E41D
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ25486.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_14
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9975..10652)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003682027
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ25485.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_15
unknown

Not on your lists

comp(10682..11056)
DNA (375bp) protein (125aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_428_16
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11073..13553)
DNA (2481bp) protein (827aa)
conjugate transposon protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002EF6C79
Conjugal transfer protein TraG {ECO:0000313|EMBL:KIA82441.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
type IV secretory pathway VirB4 components-like protein
scnpilot_solids2_trim150_scaffold_428_17
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13565..13879)
DNA (315bp) protein (105aa)
Bacteroides conjugative transposon TraF-like protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FBP9_FLAJ1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFF03694.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
scnpilot_solids2_trim150_scaffold_428_18
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13882..14220)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNT8_SOLCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD05349.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_428_19
unknown

Not on your lists

comp(14455..14640)
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_428_20
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14811..14993)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00031334AC
Uncharacterized protein {ECO:0000313|EMBL:KIC95753.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_21
unknown

Not on your lists

15135..15377
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_428_22
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15372..16379)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036297F6
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ELR71168.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
helix-turn-helix domain-containing protein
scnpilot_solids2_trim150_scaffold_428_23
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16465..17112
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036BCE49
siderophore biosynthetic enzyme
IucA/IucC {ECO:0000313|EMBL:ADG90150.1}; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
scnpilot_solids2_trim150_scaffold_428_24
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17124..18146
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037A9177
Membrane protein {ECO:0000313|EMBL:EZH73570.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_428_25
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18200..19504
DNA (1305bp) protein (435aa)
Lysine/ornithine N-monooxygenase n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11XI7_CYTH3 rbh
alcA; lysine/ornithine N-monooxygenase rbh
Lysine/ornithine N-monooxygenase {ECO:0000313|EMBL:ABG57879.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
scnpilot_solids2_trim150_scaffold_428_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19624..22281)
DNA (2658bp) protein (886aa)
Glycoside hydrolase family 2 sugar binding n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQN8_CHIPD rbh
glycoside hydrolase rbh
Glycoside hydrolase family 2 sugar binding {ECO:0000313|EMBL:ACU60661.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_428_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22323..25193)
DNA (2871bp) protein (957aa)
Peptidase S9 prolyl oligopeptidase active site domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLY0_NIAKG rbh
peptidase S9 prolyl oligopeptidase active site domain-containing protein rbh
Peptidase S9 prolyl oligopeptidase active site domain-containing protein {ECO:0000313|EMBL:AEV98740.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_428_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25247..26716)
DNA (1470bp) protein (490aa)
RagB/SusD domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLY2_NIAKG rbh
RagB/SusD domain-containing protein rbh
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEV98742.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_428_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26761..30114)
DNA (3354bp) protein (1118aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLY3_NIAKG rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:AEV98743.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
TonB-dependent receptor plug rbh
Displaying items 1-30 of 45 in total

View Taxonomy