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scnpilot_solids2_trim150_scaffold_460

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_460_1
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1..1986)
DNA (1986bp) protein (662aa)
Putative uncharacterized protein id=4626135 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
PKD domain-containing protein
Tax=GWF2_Bacteroidetes_35_48_curated
scnpilot_solids2_trim150_scaffold_460_2
unknown

Not on your lists

comp(2003..2434)
DNA (432bp) protein (144aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_460_3
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2726..3049
DNA (324bp) protein (108aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9B8_FLUTR
iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:AEA44075.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_460_4
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3061..4506
DNA (1446bp) protein (482aa)
Iron-regulated ABC transporter membrane component SufB n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9B7_FLUTR rbh
Iron-regulated ABC transporter membrane component SufB; K09014 Fe-S cluster assembly protein SufB rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_solids2_trim150_scaffold_460_5
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


4548..4928
DNA (381bp) protein (127aa)
30S ribosomal protein S23 n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B45D01
30S ribosomal protein S23
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_solids2_trim150_scaffold_460_6
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4935..5741
DNA (807bp) protein (269aa)
Iron-regulated ABC transporter ATPase subunit SufC n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9B6_FLUTR rbh
Iron-regulated ABC transporter ATPase subunit SufC; K09013 Fe-S cluster assembly ATP-binding protein rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_solids2_trim150_scaffold_460_7
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5764..7026
DNA (1263bp) protein (421aa)
FeS assembly protein SufD n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9B5_FLUTR rbh
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD rbh
FeS assembly protein SufD {ECO:0000313|EMBL:AEA44072.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_460_8
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(7085..7993)
DNA (909bp) protein (303aa)
Putative chaperonin (DnaJ family), N-terminal id=4462766 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
DEHA2B11990p
Tax=RBG_16_KB1_OP1_55_9_curated
scnpilot_solids2_trim150_scaffold_460_9
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7974..8975)
DNA (1002bp) protein (334aa)
amp-dependent synthetase and ligase; K01911 O-succinylbenzoic acid--CoA ligase [EC:6.2.1.26]
hypothetical protein n=1 Tax=Polaribacter franzmannii RepID=UPI00036A2508
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADR20518.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
scnpilot_solids2_trim150_scaffold_460_10
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9054..9506
DNA (453bp) protein (151aa)
Thioredoxin domain-containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBM6_FLUTR
Thioredoxin domain-containing protein
Thioredoxin domain-containing protein {ECO:0000313|EMBL:AEA45352.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_460_11
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9654..10682
DNA (1029bp) protein (343aa)
putative coproporphyrinogen oxidase (EC:1.3.3.3); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Probable coproporphyrinogen oxidase {ECO:0000313|EMBL:CCB68424.1}; EC=1.3.3.3 {ECO:0000313|EMBL:CCB68424.1};; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D21A6
scnpilot_solids2_trim150_scaffold_460_12
R_RIF_OD1_06_38_12, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

10722..11963
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FF54_9CLOT
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_38_12_curated
scnpilot_solids2_trim150_scaffold_460_13
Clostridium sp. CAG:594, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11974..12903
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:594 RepID=R6DRS5_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDA80627.1}; TaxID=1262826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:594.;"
Glycosyltransferases involved in cell wall biogenesis rbh
scnpilot_solids2_trim150_scaffold_460_14
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13031..14728
DNA (1698bp) protein (566aa)
Lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] rbh
Lysine--tRNA ligase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDJ1_FLUTR rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_solids2_trim150_scaffold_460_15
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14795..15769)
DNA (975bp) protein (325aa)
Geranylgeranyl glycerol-phosphate geranylgeranyltransferase (EC:2.5.1.42); K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
Geranylgeranyl glycerol-phosphate geranylgeranyltransferase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IH53_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_solids2_trim150_scaffold_460_16
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15766..17859)
DNA (2094bp) protein (698aa)
OmpA/MotB domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IH52_FLUTR rbh
OmpA/MotB domain-containing protein rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_solids2_trim150_scaffold_460_17
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17814..18431)
DNA (618bp) protein (206aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IH51_FLUTR
Radical SAM domain-containing protein
scnpilot_solids2_trim150_scaffold_460_18
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18660..19205)
DNA (546bp) protein (182aa)
GCN5-related N-acetyltransferase n=1 Tax=Pelosinus fermentans JBW45 RepID=I9NK29_9FIRM
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AJQ25659.1}; TaxID=1192197 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans JBW45.;"
acetyltransferase
scnpilot_solids2_trim150_scaffold_460_19
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19223..19978)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037FC74C rbh
Uncharacterized protein {ECO:0000313|EMBL:EKB04302.1}; TaxID=883155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides [odoratimimus] CIP 103059.;"
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
scnpilot_solids2_trim150_scaffold_460_20
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19988..21088)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00035F1197 rbh
signal transduction histidine kinase LytS
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:ACU63512.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_460_21
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21092..22492)
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000368349B rbh
Uncharacterized protein {ECO:0000313|EMBL:EGK05121.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
NodT family RND efflux system outer membrane lipoprotein rbh
scnpilot_solids2_trim150_scaffold_460_22
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22958..23095
DNA (138bp) protein (46aa)
Uncharacterized protein id=3052567 bin=GWF2_Bacteroidetes_41_31 species=Chryseobacterium sp. CF314 genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_solids2_trim150_scaffold_460_23
Hafnia alvei, Hafnia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23296..24339
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Escherichia coli 97.0259 RepID=V6FHF8_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KFC89721.1}; TaxID=910996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Hafnia.;" source="Hafnia alvei ATCC 13337.;"
scnpilot_solids2_trim150_scaffold_460_24
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24339..25319
DNA (981bp) protein (327aa)
RelA/SpoT n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GU41_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AKB25797.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. MTP4.;"
RelA/SpoT domain-containing protein
scnpilot_solids2_trim150_scaffold_460_25
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25329..26378
DNA (1050bp) protein (350aa)
Putative uncharacterized protein id=2113567 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes rbh
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
scnpilot_solids2_trim150_scaffold_460_26
unknown

Not on your lists

26475..26627
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_460_27
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

comp(26775..27905)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) RepID=Q5L9W6_BACFN rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
scnpilot_solids2_trim150_scaffold_460_28
Flavobacterium columnare, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27883..28761)
DNA (879bp) protein (293aa)
putative methyltransferase (EC:2.1.1.72) rbh
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1041826 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87).;"
Putative methyltransferase n=1 Tax=Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) RepID=G8X9U6_FLACA rbh
scnpilot_solids2_trim150_scaffold_460_29
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29002..32127)
DNA (3126bp) protein (1042aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003655A8C rbh
Multidrug transporter AcrB {ECO:0000313|EMBL:KEQ30723.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter rbh
scnpilot_solids2_trim150_scaffold_460_30
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32141..33280)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000360AE11 rbh
Uncharacterized protein {ECO:0000313|EMBL:EGK05119.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein rbh
Displaying items 1-30 of 33 in total

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