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scnpilot_solids2_trim150_scaffold_466

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_466_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..193
DNA (192bp) protein (64aa)
single-stranded DNA-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380D05B
smpB; SsrA-binding protein; K03664 SsrA-binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_466_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

320..493
DNA (174bp) protein (58aa)
hypothetical protein id=12498565 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_466_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

720..1766
DNA (1047bp) protein (349aa)
tRNA 2-selenouridine synthase; K06917 tRNA 2-selenouridine synthase [EC:2.9.1.-]
tRNA 2-selenouridine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FA849 rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_466_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1896..2330)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D3296
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_466_5
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2327..3205)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DDA1C rbh
Peroxidase {ECO:0000313|EMBL:ETM63585.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
Dyp-type peroxidase family protein rbh
scnpilot_solids2_trim150_scaffold_466_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3256..5397)
DNA (2142bp) protein (714aa)
GTP diphosphokinase, RelA/SpoT protein (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] rbh
GTP pyrophosphokinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C7756 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_466_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5390..7735)
DNA (2346bp) protein (782aa)
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC id=12495426 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC rbh
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:AAZ97712.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids2_trim150_scaffold_466_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7748..8428)
DNA (681bp) protein (227aa)
lipoprotein releasing system, ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] rbh
ABC transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000374397D rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_466_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8421..9665)
DNA (1245bp) protein (415aa)
cell division protein FtsX n=1 Tax=Thiobacillus denitrificans RepID=UPI000381F2A7 rbh
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_466_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9710..10138)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F1431
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_466_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10170..11168
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375FF67 rbh
hypothetical protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_466_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11176..12507)
DNA (1332bp) protein (444aa)
hypothetical protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] rbh
ribosomal protein S12 methylthiotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003779D5F rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_466_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12534..12758
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CF555
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_466_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12690..13466)
DNA (777bp) protein (259aa)
zinc/iron permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000363172F rbh
ZIP Zinc transporter rbh
ZIP Zinc transporter {ECO:0000313|EMBL:AAZ97718.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids2_trim150_scaffold_466_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13628..13900)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E26E5
competence protein ComEA; K02237 competence protein ComEA
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_466_16
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14344..14589)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RJG8_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KIZ37571.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_466_17
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14586..15860)
DNA (1275bp) protein (425aa)
Type IV secretion system protein VirB10 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XBY0_DELAC rbh
Conjugative transfer protein TrbI {ECO:0000313|EMBL:BAP44846.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
conjugation TrbI family protein rbh
scnpilot_solids2_trim150_scaffold_466_18
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15863..16855)
DNA (993bp) protein (331aa)
P-type conjugative transfer protein TrbG n=2 Tax=Proteobacteria RepID=K1JAD8_AERHY rbh
p-type conjugative transfer protein trbg {ECO:0000313|EMBL:BAP44845.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
P-type conjugative transfer protein TrbG rbh
scnpilot_solids2_trim150_scaffold_466_19
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16852..17556)
DNA (705bp) protein (235aa)
Conjugal transfer protein TrbF n=3 Tax=Proteobacteria RepID=M4WUI8_PSEDE rbh
conjugal transfer protein TrbF rbh
Uncharacterized protein {ECO:0000313|EMBL:EKB27232.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
scnpilot_solids2_trim150_scaffold_466_20
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17569..18954)
DNA (1386bp) protein (462aa)
P-type conjugative transfer protein TrbL n=2 Tax=Gammaproteobacteria RepID=K1JKZ1_AERHY rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KGM52054.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
scnpilot_solids2_trim150_scaffold_466_21
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18951..19271)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RJG4_PSEAI
Lipoprotein {ECO:0000313|EMBL:BAP44842.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
putative lipoprotein
scnpilot_solids2_trim150_scaffold_466_22
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19284..20009)
DNA (726bp) protein (242aa)
conjugal transfer protein TrbJ n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F37B98 rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EWC39973.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
trbJ; conjugal transfer protein TrbJ rbh
scnpilot_solids2_trim150_scaffold_466_23
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20006..22459)
DNA (2454bp) protein (818aa)
Conjugal transfer ATPase TrbE n=5 Tax=Pseudomonas aeruginosa RepID=U8D3Q7_PSEAI rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AIJ47718.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
CagE, TrbE, VirB component of type IV transporter system, conserved region; K03199 type IV secretion system protein VirB4 rbh
scnpilot_solids2_trim150_scaffold_466_24
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22475..22747)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RHT4_PSEAI
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KEH08426.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
scnpilot_solids2_trim150_scaffold_466_25
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22744..23127)
DNA (384bp) protein (128aa)
TrbC-like protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RH53_PSEAI
conjugal transfer protein TrbC
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AIJ47716.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
scnpilot_solids2_trim150_scaffold_466_26
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23124..24176)
DNA (1053bp) protein (351aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RJG0_PSEAI rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:ETD47581.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
scnpilot_solids2_trim150_scaffold_466_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24173..24637)
DNA (465bp) protein (155aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTS4_DELAS
CopG/DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ABX35338.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_solids2_trim150_scaffold_466_28
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24634..26643)
DNA (2010bp) protein (670aa)
TRAG family protein n=2 Tax=Delftia acidovorans RepID=A9BPW7_DELAS rbh
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4 rbh
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:EPD45495.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_solids2_trim150_scaffold_466_29
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26880..27158)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDU7_PSEAI
Lipoprotein {ECO:0000313|EMBL:KIZ32687.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_466_30
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27155..28099)
DNA (945bp) protein (315aa)
Transcriptional regulator n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RHS7_PSEAI rbh
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:ETD48023.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
LysR family transcriptional regulator rbh
Displaying items 1-30 of 39 in total

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