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scnpilot_solids2_trim150_scaffold_474

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_474_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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41..400
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEH4_9GAMM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L20P
scnpilot_solids2_trim150_scaffold_474_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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538..1542
DNA (1005bp) protein (335aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
phenylalanyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034693ED
scnpilot_solids2_trim150_scaffold_474_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1649..4027
DNA (2379bp) protein (793aa)
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NF38_9GAMM
scnpilot_solids2_trim150_scaffold_474_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4029..4328
DNA (300bp) protein (100aa)
transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI0003482EA4
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
integration host factor, alpha subunit
scnpilot_solids2_trim150_scaffold_474_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4309..4665
DNA (357bp) protein (119aa)
Putative transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W974_9GAMM
Putative transcriptional regulator {ECO:0000313|EMBL:EIL96015.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_474_trna_1
unknown

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4724..4797
DNA (74bp)
transferRNA Pro
scnpilot_solids2_trim150_scaffold_474_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4928..6319
DNA (1392bp) protein (464aa)
FAD/FMN-dependent dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG7_9GAMM
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EIL97858.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
FAD/FMN-dependent dehydrogenase
scnpilot_solids2_trim150_scaffold_474_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6380..7342
DNA (963bp) protein (321aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
prolyl aminopeptidase (EC:3.4.11.5)
Proline iminopeptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXB4_9GAMM
scnpilot_solids2_trim150_scaffold_474_8
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7444..7758)
DNA (315bp) protein (105aa)
phosphate starvation-inducible protein PsiF n=2 Tax=Acidovorax avenae RepID=UPI0003646DF4
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
scnpilot_solids2_trim150_scaffold_474_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7901..9397)
DNA (1497bp) protein (499aa)
ornithine/acetylornithine aminotransferase (EC:2.6.1.36)
Ornithine/acetylornithine aminotransferase {ECO:0000313|EMBL:AGG88216.1}; EC=2.6.1.36 {ECO:0000313|EMBL:AGG88216.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ornithine/acetylornithine aminotransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKA9_9GAMM
scnpilot_solids2_trim150_scaffold_474_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9746..10801
DNA (1056bp) protein (352aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5F0_9GAMM
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
scnpilot_solids2_trim150_scaffold_474_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10803..11948
DNA (1146bp) protein (382aa)
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS3_9GAMM
scnpilot_solids2_trim150_scaffold_474_12

Not on your lists

comp(11938..13806)
DNA (1869bp) protein (623aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C23F5
Peptidase M61 domain protein {ECO:0000313|EMBL:EQD76675.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glycyl aminopeptidase
scnpilot_solids2_trim150_scaffold_474_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13985..14305
DNA (321bp) protein (107aa)
Preprotein translocase subunit YajC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEF6_9GAMM
Preprotein translocase subunit YajC {ECO:0000313|EMBL:EIL97847.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
preprotein translocase, YajC subunit
scnpilot_solids2_trim150_scaffold_474_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14412..16289
DNA (1878bp) protein (626aa)
Protein translocase subunit SecD n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS5_9GAMM
protein-export membrane protein, SecD/SecF family
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_474_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16296..17354
DNA (1059bp) protein (353aa)
Protein-export membrane protein SecF n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA9_9GAMM
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein translocase subunit secF
scnpilot_solids2_trim150_scaffold_474_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17167..17925)
DNA (759bp) protein (253aa)
Nucleotidyl transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS7_9GAMM
Nucleoside-diphosphate-sugar pyrophosphorylase family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_474_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17922..18965)
DNA (1044bp) protein (348aa)
Aminoglycoside phosphotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5F6_9GAMM
aminoglycoside phosphotransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_474_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19089..19523
DNA (435bp) protein (145aa)
FeS assembly SUF system regulator, gammaproteobacterial n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5F7_9GAMM
FeS assembly SUF system regulator, gammaproteobacterial {ECO:0000313|EMBL:EIL94698.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator, BadM/Rrf2 family
scnpilot_solids2_trim150_scaffold_474_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19571..21046
DNA (1476bp) protein (492aa)
Cysteine desulfurase activator complex subunit SufB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEE6_9GAMM
Cysteine desulfurase activator complex subunit SufB {ECO:0000313|EMBL:EIL97837.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Iron-regulated ABC transporter membrane component SufB
scnpilot_solids2_trim150_scaffold_474_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21164..21928
DNA (765bp) protein (255aa)
FeS assembly ATPase SufC n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJG5_9GAMM
FeS assembly ATPase SufC {ECO:0000313|EMBL:EIL87356.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
FeS assembly ATPase SufC
scnpilot_solids2_trim150_scaffold_474_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21925..23226
DNA (1302bp) protein (434aa)
FeS assembly protein SufD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEE4_9GAMM
FeS assembly protein SufD {ECO:0000313|EMBL:EIL97835.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Iron-regulated ABC transporter permease protein SufD
scnpilot_solids2_trim150_scaffold_474_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23301..24554
DNA (1254bp) protein (418aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cysteine desulfurase-like protein, SufS subfamily (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJG7_9GAMM
scnpilot_solids2_trim150_scaffold_474_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24611..25525
DNA (915bp) protein (305aa)
Putative acyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEE2_9GAMM
Putative acyltransferase {ECO:0000313|EMBL:EIL97833.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase
scnpilot_solids2_trim150_scaffold_474_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25527..26459
DNA (933bp) protein (311aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ketopantoate reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJH4_9GAMM
scnpilot_solids2_trim150_scaffold_474_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26537..27097
DNA (561bp) protein (187aa)
GCN5-like N-acetyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5G4_9GAMM
putative acyltransferase
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EIL94705.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_474_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27082..27396
DNA (315bp) protein (105aa)
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNT8_9GAMM
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_474_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27588..28736)
DNA (1149bp) protein (383aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2E5_9GAMM
N-acetylglucosamine-6-phosphate deacetylase
scnpilot_solids2_trim150_scaffold_474_28
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28736..29812)
DNA (1077bp) protein (359aa)
Glutamine-fructose-6-phosphate transaminase {ECO:0000313|EMBL:CCF66767.1}; EC=2.6.1.16 {ECO:0000313|EMBL:CCF66767.1};; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. punicae str. LMG 859.;"
glmS; glucosamine-6-phosphate deaminase (EC:3.5.99.6); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
Glutamine-fructose-6-phosphate transaminase n=3 Tax=Xanthomonas axonopodis RepID=H1XC37_9XANT
scnpilot_solids2_trim150_scaffold_474_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29809..30840)
DNA (1032bp) protein (344aa)
LacI family transcription regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035EBD41
LacI family transcriptional regulator {ECO:0000313|EMBL:KGI77569.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Displaying items 1-30 of 51 in total

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