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scnpilot_solids2_trim150_scaffold_488

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_488_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..867)
DNA (867bp) protein (289aa)
Methylmalonyl-CoA mutase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4H6_9GAMM
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:EIL94367.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
methylmalonyl-CoA mutase, N-terminal domain/subunit
scnpilot_solids2_trim150_scaffold_488_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(936..2150)
DNA (1215bp) protein (405aa)
Fad-dependent monooxygenase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GST0_PUSST rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM26027.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
fad-dependent monooxygenase rbh
scnpilot_solids2_trim150_scaffold_488_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2378..3169
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4H9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94370.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidase family M48
scnpilot_solids2_trim150_scaffold_488_4
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3459..4649
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036A3834
response regulator receiver protein
Tax=CG_Rhodocyc_01
scnpilot_solids2_trim150_scaffold_488_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

4646..5116
DNA (471bp) protein (157aa)
CheW protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AR5_POLSJ
CheW protein; K03408 purine-binding chemotaxis protein CheW
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
scnpilot_solids2_trim150_scaffold_488_6
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5118..6503
DNA (1386bp) protein (462aa)
CheR-type MCP methyltransferase (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
MCP methyltransferase, CheR-type n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0N7_9PROT rbh
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
scnpilot_solids2_trim150_scaffold_488_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

6500..7015
DNA (516bp) protein (172aa)
CheW protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AR3_POLSJ
CheW protein; K03408 purine-binding chemotaxis protein CheW
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
scnpilot_solids2_trim150_scaffold_488_8
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7052..8758
DNA (1707bp) protein (569aa)
Methyl-accepting chemotaxis protein id=4703904 bin=GWC2_Geobacteraceae_55_20 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria rbh
methyl-accepting chemotaxis sensory transducer rbh
Tax=GWC2_Geobacteraceae_55_20_curated
scnpilot_solids2_trim150_scaffold_488_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8765..11071
DNA (2307bp) protein (769aa)
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] rbh
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003625E8D rbh
CheA signal transduction histidine kinase {ECO:0000313|EMBL:EDY15982.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
scnpilot_solids2_trim150_scaffold_488_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

11068..12129
DNA (1062bp) protein (354aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
response regulator receiver (CheY-like protein) modulated CheB methylesterase (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61] rbh
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC59_9BACT rbh
scnpilot_solids2_trim150_scaffold_488_11
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12126..14819
DNA (2694bp) protein (898aa)
sensory transduction histidine kinase (EC:2.7.3.-); K07677 two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] rbh
Putative sensory transduction histidine kinase of highly complex domain structure {ECO:0000313|EMBL:CAI09580.1}; EC=2.7.3.- {ECO:0000313|EMBL:CAI09580.1};; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000360FD56 rbh
scnpilot_solids2_trim150_scaffold_488_12
Oceanimonas sp. GK1, Oceanimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14794..16011
DNA (1218bp) protein (406aa)
hisitidine kinase n=1 Tax=Azoarcus toluclasticus RepID=UPI00036C2D98
response regulator rbh
Response regulator {ECO:0000313|EMBL:AEY02607.1}; TaxID=511062 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanimonas.;" source="Oceanimonas sp. (strain GK1).;"
scnpilot_solids2_trim150_scaffold_488_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16309..17412
DNA (1104bp) protein (368aa)
Leucine dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VND8_9GAMM
Leucine dehydrogenase {ECO:0000313|EMBL:EIL88729.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutamate dehydrogenase/leucine dehydrogenase
scnpilot_solids2_trim150_scaffold_488_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17535..18692
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase (EC:1.3.8.4)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHS3_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_488_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19081..22128)
DNA (3048bp) protein (1016aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00035FD722 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF48534.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_488_16
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22172..23401)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI000362B7E8
Uncharacterized protein {ECO:0000313|EMBL:AHX16356.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
metallophosphoesterase
scnpilot_solids2_trim150_scaffold_488_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23408..25165)
DNA (1758bp) protein (586aa)
alpha-L-fucosidase; K01206 alpha-L-fucosidase [EC:3.2.1.51] rbh
Alpha-L-fucosidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDB6_9GAMM rbh
Alpha-L-fucosidase {ECO:0000313|EMBL:EIL97457.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids2_trim150_scaffold_488_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25224..26156)
DNA (933bp) protein (311aa)
lacC; putative tagatose-6-phosphate kinase (EC:2.7.1.144); K00917 tagatose 6-phosphate kinase [EC:2.7.1.144]
Phosphofructokinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3Y7_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_488_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26153..27079)
DNA (927bp) protein (309aa)
Putative carbohydrate kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3Y8_9GAMM
Putative carbohydrate kinase {ECO:0000313|EMBL:EIL94179.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative carbohydrate kinase
scnpilot_solids2_trim150_scaffold_488_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27076..28290)
DNA (1215bp) protein (405aa)
sugar isomerase; K02082 tagatose-6-phosphate ketose/aldose isomerase [EC:5.-.-.-]
Tagatose-6-phosphate ketose/aldose isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3Y9_9GAMM
Tagatose-6-phosphate ketose/aldose isomerase {ECO:0000313|EMBL:EIL94180.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_488_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28339..29256
DNA (918bp) protein (306aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
fructose-bisphosphate aldolase n=1 Tax=Dyella japonica RepID=UPI000371A768
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:AHX14161.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids2_trim150_scaffold_488_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29345..30562
DNA (1218bp) protein (406aa)
Amidohydrolase 2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3Z1_9GAMM
Amidohydrolase 2 {ECO:0000313|EMBL:EIL94182.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
amidohydrolase 2
scnpilot_solids2_trim150_scaffold_488_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30559..31362
DNA (804bp) protein (268aa)
DeoR family regulatory protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3Z2_9GAMM
DeoR family regulatory protein {ECO:0000313|EMBL:EIL94183.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DeoR family regulatory protein; K02081 DeoR family transcriptional regulator, aga operon transcriptional repressor
scnpilot_solids2_trim150_scaffold_488_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31400..34237)
DNA (2838bp) protein (946aa)
Autotransporter serine protease n=1 Tax=Rhodanobacter denitrificans RepID=I4WPP0_9GAMM
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:AGG89648.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
autotransporter-associated beta strand repeat protein
scnpilot_solids2_trim150_scaffold_488_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34442..35626
DNA (1185bp) protein (395aa)
Acetoacetyl-CoA thiolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAZ2_9GAMM
Acetoacetyl-CoA thiolase {ECO:0000313|EMBL:EIL96633.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyl-CoA acetyltransferase
scnpilot_solids2_trim150_scaffold_488_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35875..36303
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAZ3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96634.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_488_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36486..37580
DNA (1095bp) protein (365aa)
Methylcrotonoyl-CoA carboxylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAZ4_9GAMM
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:EIL96635.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)
Displaying 27 items

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