ggKbase home page

scnpilot_solids2_trim150_scaffold_489

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_489_1
unknown

Not on your lists

comp(3..101)
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_489_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(159..965)
DNA (807bp) protein (269aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXJ1_9GAMM
scnpilot_solids2_trim150_scaffold_489_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(962..1957)
DNA (996bp) protein (332aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVN0_9GAMM
scnpilot_solids2_trim150_scaffold_489_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1954..3306)
DNA (1353bp) protein (451aa)
Chaperone SurA n=1 Tax=Rhodanobacter denitrificans RepID=I4WVM9_9GAMM
parvulin-like peptidyl-prolyl isomerase
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_489_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3340..5751)
DNA (2412bp) protein (804aa)
LPS-assembly protein LptD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVH4_9GAMM
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
organic solvent tolerance protein OstA
scnpilot_solids2_trim150_scaffold_489_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5818..6738)
DNA (921bp) protein (307aa)
Deacetylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVH5_9GAMM
Deacetylase {ECO:0000313|EMBL:EIL91216.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
deacetylase, histone deacetylase/acetoin utilization protein
scnpilot_solids2_trim150_scaffold_489_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6747..7319)
DNA (573bp) protein (191aa)
ATP/cobalamin adenosyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXI5_9GAMM
ATP/cobalamin adenosyltransferase {ECO:0000313|EMBL:EIL91926.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATP:cob(I)alamin adenosyltransferase
scnpilot_solids2_trim150_scaffold_489_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7321..7917)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NKW1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90318.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_489_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8025..9230
DNA (1206bp) protein (402aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-)
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:AGG90317.1}; EC=1.14.13.- {ECO:0000313|EMBL:AGG90317.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJN8_9GAMM
scnpilot_solids2_trim150_scaffold_489_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9299..10435
DNA (1137bp) protein (379aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WEV2_9GAMM
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:AGG90316.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_489_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10456..11244
DNA (789bp) protein (263aa)
Dienelactone hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI0_9GAMM
Dienelactone hydrolase {ECO:0000313|EMBL:EIL91221.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dienelactone hydrolase-like enzyme
scnpilot_solids2_trim150_scaffold_489_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11482..12474)
DNA (993bp) protein (331aa)
Geranylgeranyl pyrophosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W160_9GAMM
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:EIL93201.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
geranylgeranyl pyrophosphate synthase
scnpilot_solids2_trim150_scaffold_489_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12623..13825
DNA (1203bp) protein (401aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXH9_9GAMM
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIL91920.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
arabinose efflux permease family protein
scnpilot_solids2_trim150_scaffold_489_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13895..14878
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W162_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93203.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative membrane-associated protein
scnpilot_solids2_trim150_scaffold_489_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15062..15574
DNA (513bp) protein (171aa)
Single-stranded DNA-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W169_9GAMM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
single stranded DNA-binding protein
scnpilot_solids2_trim150_scaffold_489_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15812..16420
DNA (609bp) protein (203aa)
Outer membrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTW9_9GAMM
Outer membrane protein {ECO:0000313|EMBL:EIL90660.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_489_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16679..18574
DNA (1896bp) protein (632aa)
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGT6_9GAMM
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
K+ transporter
scnpilot_solids2_trim150_scaffold_489_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18611..19513)
DNA (903bp) protein (301aa)
Putative DNA ligase family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W172_9GAMM
Putative DNA ligase family protein {ECO:0000313|EMBL:EIL93213.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ATP-dependent DNA ligase
scnpilot_solids2_trim150_scaffold_489_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19599..20051)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6E4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95035.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_489_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20700..22481
DNA (1782bp) protein (594aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Putative two-component sensor histidine kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXH2_9GAMM
PAS domain S-box
scnpilot_solids2_trim150_scaffold_489_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22490..22936
DNA (447bp) protein (149aa)
Two-component system response regulator protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXH1_9GAMM
Two-component system response regulator protein {ECO:0000313|EMBL:EIL91912.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids2_trim150_scaffold_489_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22999..24561
DNA (1563bp) protein (521aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYK5_9GAMM
Signal transduction histidine kinase {ECO:0000313|EMBL:EIL92296.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_489_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24776..25879
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3H4_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_489_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25941..27089
DNA (1149bp) protein (383aa)
succinyl-diaminopimelate desuccinylase (EC:3.5.1.18)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Succinyl-diaminopimelate desuccinylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NQI0_9GAMM
scnpilot_solids2_trim150_scaffold_489_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27174..28877)
DNA (1704bp) protein (568aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NQ27_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89726.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_489_26
unknown

Not on your lists

comp(29082..29519)
DNA (438bp) protein (146aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_489_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29538..31835)
DNA (2298bp) protein (766aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUE3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03085.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIR-like domain-containing protein (DUF1863)
scnpilot_solids2_trim150_scaffold_489_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32067..32396)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3G8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_489_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32393..34801)
DNA (2409bp) protein (803aa)
Penicillin amidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYR8_9GAMM
Penicilin amidase {ECO:0000313|EMBL:AGG89846.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
penicilin amidase
scnpilot_solids2_trim150_scaffold_489_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34798..35616)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU42_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02984.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative periplasmic protein
Displaying items 1-30 of 33 in total

View Taxonomy