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scnpilot_solids2_trim150_scaffold_535

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_535_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(159..1280)
DNA (1122bp) protein (374aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
anmK; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] rbh
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM26_9RHIZ rbh
scnpilot_solids2_trim150_scaffold_535_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1356..3065)
DNA (1710bp) protein (570aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPK3_NITWN
Enoyl-CoA hydratase {ECO:0000313|EMBL:KFC75484.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_535_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3082..3531)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P620_9BRAD
TadE family protein {ECO:0000313|EMBL:KFC75483.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TadE family protein
scnpilot_solids2_trim150_scaffold_535_4
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3775..4743
DNA (969bp) protein (323aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ESR23866.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ESR23866.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000370F7F2
enoyl-CoA hydratase/isomerase; K13816 DSF synthase
scnpilot_solids2_trim150_scaffold_535_5
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4765..7329)
DNA (2565bp) protein (855aa)
multi-sensor hybrid histidine kinase; K10715 two-component system, sensor histidine kinase RpfC [EC:2.7.13.3] rbh
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RKT1_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ESR23865.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
scnpilot_solids2_trim150_scaffold_535_6
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7337..9472)
DNA (2136bp) protein (712aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RER0_9RHIZ rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:ESR23864.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) rbh
scnpilot_solids2_trim150_scaffold_535_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9691..10782)
DNA (1092bp) protein (364aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sulfate ABC transporter ATPase; K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25] rbh
sulfate ABC transporter ATP-binding protein n=1 Tax=Xanthobacteraceae RepID=UPI0003662331 rbh
scnpilot_solids2_trim150_scaffold_535_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10796..11656)
DNA (861bp) protein (287aa)
UPI0003CF89A7 related cluster n=1 Tax=unknown RepID=UPI0003CF89A7
Sulfate ABC transporter, permease protein CysW {ECO:0000313|EMBL:KFC61556.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sulfate ABC transporter permease; K02047 sulfate transport system permease protein
scnpilot_solids2_trim150_scaffold_535_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11649..12494)
DNA (846bp) protein (282aa)
Sulfate ABC transporter, inner membrane subunit CysT n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUV6_PARL1
Sulfate ABC transporter, inner membrane subunit CysT {ECO:0000313|EMBL:KFC61557.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sulfate ABC transporter permease; K02046 sulfate transport system permease protein
scnpilot_solids2_trim150_scaffold_535_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12499..13545)
DNA (1047bp) protein (349aa)
sulfate transporter subunit n=1 Tax=Methyloferula stellata RepID=UPI00037879AE rbh
Sulfate ABC transporter, periplasmic sulfate-binding protein {ECO:0000313|EMBL:KFC61558.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sulfate ABC transporter substrate-binding protein; K02048 sulfate transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_535_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13763..14917
DNA (1155bp) protein (385aa)
Putative FAD dependent oxidoreductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYP0_9PROT rbh
Putative FAD dependent oxidoreductase {ECO:0000313|EMBL:KFC70951.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycine/D-amino acid oxidase, deaminating
scnpilot_solids2_trim150_scaffold_535_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14942..15274
DNA (333bp) protein (111aa)
Putative oxidoreductase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A3I0_9ACTN
Agropine synthesis reductase {ECO:0000313|EMBL:KFC70952.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative oxidoreductase
scnpilot_solids2_trim150_scaffold_535_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15271..15654
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhizobium radiobacter RepID=K7WN37_RHIRD
Agropine synthesis reductase {ECO:0000313|EMBL:KFC70952.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
short-chain dehydrogenase
scnpilot_solids2_trim150_scaffold_535_14
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15719..17266
DNA (1548bp) protein (516aa)
Extracellular solute-binding protein, family 5 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYN2_9PROT rbh
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EDP62476.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative extracellular solute-binding protein, family 5 precursor rbh
scnpilot_solids2_trim150_scaffold_535_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17319..18257
DNA (939bp) protein (313aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYN0_9PROT rbh
Putative peptide transporter permease subunit: membrane component of ABC superfamily protein {ECO:0000313|EMBL:KFC70954.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_535_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18254..19144
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYM8_9PROT rbh
Dipeptide transporter membrane component of ABC superfamily protein {ECO:0000313|EMBL:KFC70955.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_535_17
bacterium YEK0313, Bacteria

Not on your lists

19147..20964
DNA (1818bp) protein (606aa)
ABC transporter related n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M5V1_METRJ rbh
Glutathione import ATP-binding protein GsiA {ECO:0000313|EMBL:CEJ14830.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein rbh
scnpilot_solids2_trim150_scaffold_535_18
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21145..22596)
DNA (1452bp) protein (484aa)
aldehyde dehydrogenase (EC:1.2.1.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
Aldehyde dehydrogenase NAD-linked {ECO:0000313|EMBL:CAL75445.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CAL75445.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
aldehyde dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031DD017 rbh
scnpilot_solids2_trim150_scaffold_535_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(22731..25460)
DNA (2730bp) protein (910aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003648053
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
scnpilot_solids2_trim150_scaffold_535_20
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25578..26276)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NR16_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:AHY56064.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
branched-chain amino acid ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_535_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26273..28126)
DNA (1854bp) protein (618aa)
ABC transporter related n=2 Tax=Oligotropha carboxidovorans RepID=B6JAW1_OLICO
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
ABC transporter, putative high-affinity branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:AEI07739.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_535_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28140..29015)
DNA (876bp) protein (292aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJL6_NITHX rbh
inner-membrane translocator rbh
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABE63581.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_535_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29055..30404)
DNA (1350bp) protein (450aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJL5_NITHX rbh
twin-arginine translocation pathway signal rbh
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABE63582.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_535_24
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30579..33983)
DNA (3405bp) protein (1135aa)
CaiC protein {ECO:0000313|EMBL:BAQ43587.1}; EC=6.2.1.20 {ECO:0000313|EMBL:BAQ43587.1};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
acylglycerophosphoethanolamine acyltransferase; K05939 acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] rbh
acylglycerophosphoethanolamine acyltransferase n=1 Tax=Methylobacterium sp. 77 RepID=UPI000364517D rbh
scnpilot_solids2_trim150_scaffold_535_25
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34267..34863
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ICZ1_METNO
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACL59383.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Displaying 25 items

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