ggKbase home page

scnpilot_solids2_trim150_scaffold_538

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_538_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..871
DNA (870bp) protein (290aa)
N-acetylornithine carbamoyltransferase {ECO:0000313|EMBL:EIM01578.1}; EC=2.1.3.9 {ECO:0000313|EMBL:EIM01578.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ornithine carbamoyltransferase (EC:2.1.3.9)
N-acetylornithine carbamoyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ36_9GAMM
scnpilot_solids2_trim150_scaffold_538_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

901..1527
DNA (627bp) protein (209aa)
Negative transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U7_9GAMM
Negative transcriptional regulator {ECO:0000313|EMBL:EIL94838.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_538_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1524..2003
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03500.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative redox protein, regulator of disulfide bond formation
scnpilot_solids2_trim150_scaffold_538_4
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2033..3226
DNA (1194bp) protein (398aa)
Argininosuccinate synthase {ECO:0000256|SAAS:SAAS00214603}; EC=6.3.4.5 {ECO:0000256|SAAS:SAAS00009947};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ39_9GAMM
scnpilot_solids2_trim150_scaffold_538_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3223..4371
DNA (1149bp) protein (383aa)
Acetylornithine deacetylase {ECO:0000313|EMBL:EIL88844.1}; EC=3.5.1.16 {ECO:0000313|EMBL:EIL88844.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase (EC:3.5.1.-)
Acetylornithine deacetylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNQ3_9GAMM
scnpilot_solids2_trim150_scaffold_538_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4358..5779
DNA (1422bp) protein (474aa)
Acetylglutamate kinase {ECO:0000313|EMBL:EIL88845.1}; EC=2.7.2.8 {ECO:0000313|EMBL:EIL88845.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
N-acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNQ4_9GAMM
scnpilot_solids2_trim150_scaffold_538_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5776..6744
DNA (969bp) protein (323aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|SAAS:SAAS00137393}; EC=1.2.1.38 {ECO:0000256|SAAS:SAAS00137393};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5V2_9GAMM
scnpilot_solids2_trim150_scaffold_538_8
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6819..8114
DNA (1296bp) protein (432aa)
Argininosuccinate lyase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVK2_9GAMM
Argininosuccinate lyase {ECO:0000313|EMBL:AIF47503.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
argininosuccinate lyase
scnpilot_solids2_trim150_scaffold_538_9
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8305..8745)
DNA (441bp) protein (147aa)
2-aminomuconate deaminase n=1 Tax=Dyella japonica RepID=UPI0002D376B0
Uncharacterized protein {ECO:0000313|EMBL:KFN50906.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
putative translation initiation inhibitor, yjgF family
scnpilot_solids2_trim150_scaffold_538_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8901..9689
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA1_9GAMM
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:EIL88692.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids2_trim150_scaffold_538_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9766..11214
DNA (1449bp) protein (483aa)
2-aminomuconic semialdehyde dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKV5_9GAMM
2-aminomuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:EIM00097.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
NAD-dependent aldehyde dehydrogenase
scnpilot_solids2_trim150_scaffold_538_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11328..11840
DNA (513bp) protein (171aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
3-hydroxyanthranilate 3,4-dioxygenase (EC:1.13.11.6)
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLI7_9GAMM
scnpilot_solids2_trim150_scaffold_538_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11890..12915
DNA (1026bp) protein (342aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTP3_9GAMM
putative TIM-barrel fold metal-dependent hydrolase
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:AGG88372.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_538_14
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13007..14296
DNA (1290bp) protein (430aa)
Kynureninase {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800};; L-kynurenine hydrolase {ECO:0000256|HAMAP-Rule:MF_01970}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Kynureninase (EC:3.7.1.3)
kynureninase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6CB5B
scnpilot_solids2_trim150_scaffold_538_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14300..15670
DNA (1371bp) protein (457aa)
Kynurenine 3-monooxygenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP91_9GAMM
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:EIM01283.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
scnpilot_solids2_trim150_scaffold_538_16
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15790..17274
DNA (1485bp) protein (495aa)
Putative amino acid transporter n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPS5_9GAMM rbh
Putative amino acid transporter {ECO:0000313|EMBL:EED30444.1}; TaxID=566466 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
amino acid permease rbh
scnpilot_solids2_trim150_scaffold_538_17
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17283..18761
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI000374AF37 rbh
Aldo/keto reductase {ECO:0000313|EMBL:EED30443.1}; TaxID=566466 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
endoribonuclease L-PSP
scnpilot_solids2_trim150_scaffold_538_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18855..19391)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NKS7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88371.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_538_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19445..21553)
DNA (2109bp) protein (703aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTP4_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG88373.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_538_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21682..23265)
DNA (1584bp) protein (528aa)
Putative Zn-dependent protease n=1 Tax=Rhodanobacter denitrificans RepID=M4NPY7_9GAMM
putative Zn-dependent protease
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_538_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23428..23694
DNA (267bp) protein (89aa)
Glutaredoxin, GrxC family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WES6_9GAMM
Glutaredoxin, GrxC family protein {ECO:0000313|EMBL:EIL97967.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Glutaredoxin, GrxC family
scnpilot_solids2_trim150_scaffold_538_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23691..24068
DNA (378bp) protein (126aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Alkylhydroperoxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAB5_9GAMM
alkylhydroperoxidase AhpD family core domain protein
scnpilot_solids2_trim150_scaffold_538_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24225..25238
DNA (1014bp) protein (338aa)
Isocitrate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYC0_9GAMM rbh
isocitrate/isopropylmalate dehydrogenase rbh
Isocitrate/isopropylmalate dehydrogenase {ECO:0000313|EMBL:AGG89688.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_538_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25605..26549)
DNA (945bp) protein (315aa)
Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W431_9GAMM
Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase {ECO:0000313|EMBL:EIL94222.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
aspartyl/asparaginyl beta-hydroxylase-like dioxygenase
scnpilot_solids2_trim150_scaffold_538_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26666..28045)
DNA (1380bp) protein (460aa)
PhoH family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFP2_9GAMM
PhoH family protein
PhoH family protein {ECO:0000313|EMBL:AGG89684.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_538_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28179..28640)
DNA (462bp) protein (154aa)
Peroxiredoxin n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ25_9GAMM
Peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AGG89683.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_538_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28696..29277)
DNA (582bp) protein (194aa)
Glycine cleavage system regulatory protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHV3_9GAMM
glycine cleavage system regulatory protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_538_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29378..30280
DNA (903bp) protein (301aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB23_9GAMM
scnpilot_solids2_trim150_scaffold_538_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30312..30890
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB22_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96663.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_538_30
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30930..31253)
DNA (324bp) protein (108aa)
4Fe-4S ferredoxin n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAM8_9GAMM
Ferredoxin {ECO:0000313|EMBL:GAN45917.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ferredoxin
Displaying items 1-30 of 35 in total

View Taxonomy