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scnpilot_solids2_trim150_scaffold_542

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_542_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1448)
DNA (1446bp) protein (482aa)
amidase; K01426 amidase [EC:3.5.1.4] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E80878 rbh
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:KFC66860.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_542_2
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1778..2266)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00036166F8
MarR protein {ECO:0000313|EMBL:BAQ49036.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
TrmB family transcriptional regulator
scnpilot_solids2_trim150_scaffold_542_3
bacterium YEK0313, Bacteria

Not on your lists

2418..4046
DNA (1629bp) protein (543aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
AMP-dependent synthetase and ligase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IBK9_METNO rbh
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CEJ10310.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_542_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4250..5023
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F14ACE
Uncharacterized protein {ECO:0000313|EMBL:KFG69828.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_542_5
unknown

Not on your lists

comp(5269..5580)
DNA (312bp) protein (104aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_542_6
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5740..6252
DNA (513bp) protein (171aa)
AsnC family transcriptional regulator n=2 Tax=Rhodospirillum rubrum RepID=G2T8Q8_RHORU
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABC23703.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
scnpilot_solids2_trim150_scaffold_542_7
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6427..7338)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EDEC8E rbh
beta-lactamase domain-containing protein rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:ACA17170.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_542_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7478..8089
DNA (612bp) protein (204aa)
biotin biosynthesis protein BioY n=1 Tax=gamma proteobacterium HIMB30 RepID=UPI000262C999
BioY protein {ECO:0000313|EMBL:KFC66847.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
BioY protein; K03523 putative biotin biosynthesis protein BioY
scnpilot_solids2_trim150_scaffold_542_9
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8171..9316)
DNA (1146bp) protein (382aa)
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
GTP cyclohydrolase; K01497 GTP cyclohydrolase II [EC:3.5.4.25] rbh
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000380BD89 rbh
scnpilot_solids2_trim150_scaffold_542_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9464..10186
DNA (723bp) protein (241aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAZ1_STAND
bifunctional deaminase-reductase domain-containing protein
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:ADH91008.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_542_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10311..11753)
DNA (1443bp) protein (481aa)
FAD/FMN-dependent dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYJ5_9RHIZ rbh
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EIM29037.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
FAD linked oxidase domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_542_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11764..13593)
DNA (1830bp) protein (610aa)
family 2 glycosyl transferase; K03669 membrane glycosyltransferase [EC:2.4.1.-] rbh
glucosyl transferase family 2 n=1 Tax=Xanthobacteraceae RepID=UPI000377AFA7 rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADH91002.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_542_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13695..14702
DNA (1008bp) protein (336aa)
dehydrogenase n=1 Tax=Xanthobacteraceae RepID=UPI0003751C93 rbh
alcohol dehydrogenase zinc-binding domain-containing protein rbh
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ADH91003.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_542_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14689..15090
DNA (402bp) protein (134aa)
6-pyruvoyl tetrahydropterin synthase n=1 Tax=Xanthobacteraceae RepID=UPI000375D899
Queuosine biosynthesis protein QueD {ECO:0000313|EMBL:KFC66719.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_542_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15087..16136
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037B8425 rbh
group 1 glycosyl transferase rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADH91005.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_542_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16214..17266
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UD08_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP55336.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_542_17
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17342..18154)
DNA (813bp) protein (271aa)
Probable short-chain dehydrogenase (Fragment) n=1 Tax=Bordetella bronchiseptica Bbr77 RepID=K4T1Z4_BORBO rbh
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:KCV60223.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
short-chain dehydrogenase rbh
scnpilot_solids2_trim150_scaffold_542_18
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18179..19261)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=3 Tax=Bordetella RepID=K0M887_BORPB rbh
hypothetical protein rbh
CoA-transferase family III protein {ECO:0000313|EMBL:KCV60227.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
scnpilot_solids2_trim150_scaffold_542_19
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19264..20598)
DNA (1335bp) protein (445aa)
Coenzyme A ligase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QLS0_BORBO rbh
coenzyme A ligase rbh
AMP-binding enzyme {ECO:0000313|EMBL:KCV60246.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
scnpilot_solids2_trim150_scaffold_542_20
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20595..21242)
DNA (648bp) protein (216aa)
TetR-family transcriptional regulator n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QM80_BORBO
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:KCV60237.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
scnpilot_solids2_trim150_scaffold_542_21
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21242..22432)
DNA (1191bp) protein (397aa)
Putative acyl-CoA dehyrdogenase n=3 Tax=Bordetella bronchiseptica RepID=K0MDM6_BORBM rbh
acyl-CoA dehyrdogenase rbh
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:KDD58800.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
scnpilot_solids2_trim150_scaffold_542_22
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22447..23439)
DNA (993bp) protein (331aa)
Branched-chain amino acid ABC transporter,permease protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QMA6_BORBO rbh
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:KDD58805.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
branched-chain amino acid ABC transporter permease rbh
scnpilot_solids2_trim150_scaffold_542_23
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23439..24305)
DNA (867bp) protein (289aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4TYN5_BORBO rbh
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:KCB44031.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
branched-chain amino acid ABC transporter permease rbh
scnpilot_solids2_trim150_scaffold_542_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24302..25045)
DNA (744bp) protein (248aa)
Branched-chain amino acid ABC transporter,ATP-binding protein n=3 Tax=Bordetella bronchiseptica RepID=K4QLR6_BORBO rbh
branched-chain amino acid ABC transporter ATP-binding protein rbh
Branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CCN21532.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
scnpilot_solids2_trim150_scaffold_542_25
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25042..25818)
DNA (777bp) protein (259aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Bordetella bronchiseptica D445 RepID=K4TIG7_BORBO rbh
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KCV60275.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
ABC transporter ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_542_26
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25916..27085)
DNA (1170bp) protein (390aa)
Branched-chain amino acid ABC transporter, binding protein n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4TXX0_BORBO rbh
branched-chain amino acid ABC transporter substrate-binding protein rbh
Branched-chain amino acid ABC transporter, binding protein {ECO:0000313|EMBL:CCN21534.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
scnpilot_solids2_trim150_scaffold_542_27
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27391..27777
DNA (387bp) protein (129aa)
Uncharacterized protein n=4 Tax=Bordetella RepID=K0MAL6_BORPB
PF01796 domain protein {ECO:0000313|EMBL:KCV60251.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
hypothetical protein; K07068
scnpilot_solids2_trim150_scaffold_542_28
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27774..28922
DNA (1149bp) protein (383aa)
Putative thiolase n=3 Tax=Bordetella bronchiseptica RepID=K4QM72_BORBO rbh
Thiolase, C-terminal domain protein {ECO:0000313|EMBL:KCB44301.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
thiolase rbh
scnpilot_solids2_trim150_scaffold_542_29
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28948..29886
DNA (939bp) protein (313aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FY79_9BURK
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EOA06403.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
short-chain dehydrogenase/reductase sdr
scnpilot_solids2_trim150_scaffold_542_30
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29898..30761
DNA (864bp) protein (288aa)
Putative hydratase n=1 Tax=Bordetella bronchiseptica Bbr77 RepID=K4T9W6_BORBO rbh
MaoC-like protein {ECO:0000313|EMBL:KCV60267.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
hydratase rbh
Displaying items 1-30 of 33 in total

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