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scnpilot_solids2_trim150_scaffold_586

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_586_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..295
DNA (294bp) protein (98aa)
hypothetical protein; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D4N3_BRAJP
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:KGT81146.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
scnpilot_solids2_trim150_scaffold_586_2

Not on your lists

307..819
DNA (513bp) protein (171aa)
hypothetical protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2] rbh
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D4N4_BRAJP rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN83657.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_solids2_trim150_scaffold_586_3
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

816..3236
DNA (2421bp) protein (807aa)
Carbon monoxide dehydrogenase large chain {ECO:0000313|EMBL:CCE07530.1}; EC=1.2.99.2 {ECO:0000313|EMBL:CCE07530.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Carbon monoxide dehydrogenase large chain n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TM42_9BRAD rbh
carbon monoxide dehydrogenase large chain rbh
scnpilot_solids2_trim150_scaffold_586_4

Not on your lists

3246..4124
DNA (879bp) protein (293aa)
Carbon monoxide dehydrogenase, coxD accessory protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RPS0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN83655.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
coxD; carbon monoxide dehydrogenase CoxD accessory protein rbh
scnpilot_solids2_trim150_scaffold_586_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4124..5332
DNA (1209bp) protein (403aa)
carbon monoxide dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000366E1A1 rbh
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:KJC58350.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_586_6
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5344..6192
DNA (849bp) protein (283aa)
Carbon monoxide dehydrogenase, coxF accessory protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T9C8_9BRAD rbh
Carbon monoxide dehydrogenase, coxF accessory protein {ECO:0000313|EMBL:CCE03055.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
coxF; carbon monoxide dehydrogenase CoxF accessory protein rbh
scnpilot_solids2_trim150_scaffold_586_7
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6206..6670
DNA (465bp) protein (155aa)
Carbon monoxide dehydrogenase subunit G n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MF87_9RHIZ
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:KFB11252.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
carbon monoxide dehydrogenase subunit G; K09386 hypothetical protein
scnpilot_solids2_trim150_scaffold_586_8
unknown

Not on your lists

6820..6948
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_586_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7099..7806
DNA (708bp) protein (236aa)
Plasmid pRiA4b ORF-3-like protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JPZ2_AGRRK
plasmid pRiA4b ORF-3-like protein
Plasmid pRiA4b ORF-3-like protein {ECO:0000313|EMBL:ACM31211.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
scnpilot_solids2_trim150_scaffold_586_10
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7787..8599)
DNA (813bp) protein (271aa)
Integrase family protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9L5_CAUSK rbh
Integrase family protein {ECO:0000313|EMBL:KDM65090.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
integrase family protein; K04763 integrase/recombinase XerD rbh
scnpilot_solids2_trim150_scaffold_586_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8744..10144
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JPZ3_AGRRK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM31212.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
scnpilot_solids2_trim150_scaffold_586_12
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10220..11164
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D8429 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV15389.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_586_13
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11167..11871
DNA (705bp) protein (235aa)
transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI00035FC6CE rbh
Transcriptional regulator {ECO:0000313|EMBL:ESX60217.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
chromosome segregation and condensation protein scpb rbh
scnpilot_solids2_trim150_scaffold_586_14
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11949..12419)
DNA (471bp) protein (157aa)
RES domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNW2_MESCW
res domain protein
RES domain protein {ECO:0000313|EMBL:ADV15391.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_586_15
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12464..12802)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EFZ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EXL04916.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_586_16
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13179..13973
DNA (795bp) protein (265aa)
UPI0003D00001 related cluster n=1 Tax=unknown RepID=UPI0003D00001 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ13063.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_586_17
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14558..15058
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037140F1
Tryptophan-rich sensory protein {ECO:0000313|EMBL:CDX46922.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
tryptophan-rich sensory protein; K07185 tryptophan-rich sensory protein
scnpilot_solids2_trim150_scaffold_586_18
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15071..16525
DNA (1455bp) protein (485aa)
deoxyribodipyrimidine photo-lyase type I (EC:4.1.99.3); K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] rbh
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000363812E rbh
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KHL08785.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
scnpilot_solids2_trim150_scaffold_586_19
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16582..17031)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003828A01
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EIZ86645.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_586_20
unknown

Not on your lists

17174..17332
DNA (159bp) protein (53aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_586_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17396..18508
DNA (1113bp) protein (371aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hemH; ferrochelatase; K01772 ferrochelatase [EC:4.99.1.1] rbh
Ferrochelatase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V895_9BRAD
scnpilot_solids2_trim150_scaffold_586_22
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18503..20038)
DNA (1536bp) protein (512aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000374DEAE rbh
Uncharacterized protein {ECO:0000313|EMBL:EDP62712.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
deoxyribodipyrimidine photolyase-like protein; K06876 deoxyribodipyrimidine photolyase-related protein rbh
scnpilot_solids2_trim150_scaffold_586_23
unknown

Not on your lists

comp(20035..20160)
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_586_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20261..20737)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNC7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29914.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_586_25
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20881..21603)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI0003685995
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACB79158.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_586_26
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21673..22482)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ESZ6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV08079.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_586_27
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22652..23203)
DNA (552bp) protein (184aa)
UPI0003D057D4 related cluster n=1 Tax=unknown RepID=UPI0003D057D4
Fasciclin {ECO:0000313|EMBL:ESZ27266.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
secreted protein MPB70 (and transforming growth factor-induced protein)
scnpilot_solids2_trim150_scaffold_586_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23501..24721)
DNA (1221bp) protein (407aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUL1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29913.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_586_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24711..25526)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHT8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29912.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein; K09701 hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_586_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25526..26905)
DNA (1380bp) protein (460aa)
Amine oxidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V891_9BRAD
Protoporphyrinogen oxidase {ECO:0000313|EMBL:CEG09086.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein; K06954
Displaying items 1-30 of 38 in total

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