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scnpilot_solids2_trim150_scaffold_587

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_587_1
unknown

Not on your lists

1..471
DNA (471bp) protein (157aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_587_2
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(527..1894)
DNA (1368bp) protein (456aa)
Putative transcriptional regulatory protein PtsJ n=1 Tax=Halomonas sp. A3H3 RepID=T2L7U4_9GAMM rbh
Putative transcriptional regulatory protein PtsJ {ECO:0000313|EMBL:CDG53168.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
transcriptional regulatory protein PtsJ rbh
scnpilot_solids2_trim150_scaffold_587_3
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1944..2837
DNA (894bp) protein (298aa)
dihydrodipicolinate synthase n=1 Tax=Halomonas lutea RepID=UPI00035F73FA rbh
Uncharacterized protein {ECO:0000313|EMBL:CDG53169.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
dapA; dihydrodipicolinate synthase rbh
scnpilot_solids2_trim150_scaffold_587_4
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2872..4104
DNA (1233bp) protein (411aa)
Putative major facilitator superfamily transporter n=1 Tax=Halomonas sp. A3H3 RepID=T2L8P6_9GAMM rbh
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:CDG53170.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_587_5
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4153..5469)
DNA (1317bp) protein (439aa)
L-lactate permease n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y283_PARAH rbh
L-lactate permease rbh
L-lactate permease {ECO:0000313|EMBL:AGT09865.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
scnpilot_solids2_trim150_scaffold_587_6
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5672..6001)
DNA (330bp) protein (110aa)
Antioxidant, AhpC/TSA family n=2 Tax=Nitrosococcus oceani RepID=B6C1N3_9GAMM
hypothetical protein
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KFI19596.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
scnpilot_solids2_trim150_scaffold_587_7
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5967..6233)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TDM4_9GAMM
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KFX69718.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
thioredoxin
scnpilot_solids2_trim150_scaffold_587_8
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6336..6572)
DNA (237bp) protein (79aa)
Thioredoxin n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z498_9RHOO
Thioredoxin {ECO:0000313|EMBL:CDI01602.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_587_9
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6683..7984)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000381A9F1 rbh
GntR family transcription regulator protein {ECO:0000313|EMBL:EZP38943.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
GntR family transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_587_10
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8091..8906
DNA (816bp) protein (272aa)
Alanine racemase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3U7V4_ADVKW rbh
Putative pyridoxal-phosphate protein, YggS Family {ECO:0000313|EMBL:AHG62452.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
alanine racemase rbh
scnpilot_solids2_trim150_scaffold_587_11
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8903..11068
DNA (2166bp) protein (722aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Acetylornithine aminotransferase n=1 Tax=Pseudomonas aeruginosa VRFPA04 RepID=U5ARL6_PSEAI rbh
acetylornithine and succinylornithine aminotransferase rbh
scnpilot_solids2_trim150_scaffold_587_12
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11127..12398
DNA (1272bp) protein (424aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
Serine hydroxymethyltransferase n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PCC21 RepID=J7L364_PECCC rbh
glycine hydroxymethyltransferase rbh
scnpilot_solids2_trim150_scaffold_587_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12414..13358
DNA (945bp) protein (315aa)
Transcriptional regulator n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WFB8_PSEAI rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB83968.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids2_trim150_scaffold_587_14
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13355..13633
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WFV4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EXI88108.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_587_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13870..15870
DNA (2001bp) protein (667aa)
Conjugal transfer protein TraG n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL69_BORPD
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:GAO26443.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
traG1; conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
scnpilot_solids2_trim150_scaffold_587_16
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15867..16331
DNA (465bp) protein (155aa)
Uncharacterized protein n=8 Tax=Pseudomonas aeruginosa RepID=K1CJV3_PSEAI
CopG family transcriptional regulator {ECO:0000313|EMBL:KIZ32670.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_587_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16328..17377
DNA (1050bp) protein (350aa)
P-type conjugative transfer ATPase TrbB n=3 Tax=Pseudomonas aeruginosa RepID=U8YMQ2_PSEAI rbh
Putative conjugal transfer protein TrbB {ECO:0000313|EMBL:CEI04072.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
p-type conjugative transfer ATPase trbb; K03196 type IV secretion system protein VirB11 rbh
scnpilot_solids2_trim150_scaffold_587_18
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17374..17766
DNA (393bp) protein (131aa)
TrbC-like protein n=3 Tax=Pseudomonas aeruginosa RepID=U8YSE5_PSEAI
Conjugal transfer protein TrbC {ECO:0000313|EMBL:BAP44838.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
trbC; conjugal transfer TrbC transmembrane protein; K03197 type IV secretion system protein VirB2
scnpilot_solids2_trim150_scaffold_587_19
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17763..18035
DNA (273bp) protein (91aa)
conjugal transfer protein TrbD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000381E1AD
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KGM52058.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
trbD1; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
scnpilot_solids2_trim150_scaffold_587_20
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18048..20507
DNA (2460bp) protein (820aa)
VirB4 family type IV secretion/conjugal transfer ATPase n=4 Tax=Pseudomonas aeruginosa RepID=N2D3B7_PSEAI rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EPZ14906.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
trbE; conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4 rbh
scnpilot_solids2_trim150_scaffold_587_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20504..21259
DNA (756bp) protein (252aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV30_ALIDB
p-type conjugative transfer protein trbj
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:ADV00562.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids2_trim150_scaffold_587_22
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21272..21616
DNA (345bp) protein (115aa)
Uncharacterized protein n=4 Tax=Pseudomonas aeruginosa RepID=N2D047_PSEAI
lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
scnpilot_solids2_trim150_scaffold_587_23
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21613..22998
DNA (1386bp) protein (462aa)
Conjugal transfer transmembrane protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN37_RALME
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Conjugal transfer transmembrane protein {ECO:0000313|EMBL:ABF08439.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
scnpilot_solids2_trim150_scaffold_587_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23023..23727
DNA (705bp) protein (235aa)
Conjugal transfer protein n=2 Tax=Comamonadaceae RepID=B9MII6_ACIET
Conjugal transfer protein Trbf {ECO:0000313|EMBL:GAO21834.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer protein Trbf; K03200 type IV secretion system protein VirB5
scnpilot_solids2_trim150_scaffold_587_25
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23724..24722
DNA (999bp) protein (333aa)
conjugative transfer protein TrbG n=1 Tax=Pseudomonas aeruginosa RepID=UPI0002EF05C7 rbh
Type IV secretion system protein PtlF {ECO:0000313|EMBL:AKC05780.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
p-type conjugative transfer protein trbg
scnpilot_solids2_trim150_scaffold_587_26
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24725..25990
DNA (1266bp) protein (422aa)
TrbI-like protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDY9_PSEAI
Conjugative transfer protein TrbI {ECO:0000313|EMBL:BAP44846.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
conjugation TrbI family protein
scnpilot_solids2_trim150_scaffold_587_27
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25987..26214
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9KS17_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ03005.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
conjugal transfer protein
scnpilot_solids2_trim150_scaffold_587_28
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26242..27975)
DNA (1734bp) protein (578aa)
DNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
Predicted DNA helicase n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LFE7_BURGS rbh
scnpilot_solids2_trim150_scaffold_587_29
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27979..29814)
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LFE6_BURGS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA61112.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
scnpilot_solids2_trim150_scaffold_587_30

Not on your lists

comp(29851..30873)
DNA (1023bp) protein (341aa)
Protein containing DUF1814 n=1 Tax=mine drainage metagenome RepID=T0ZEG3_9ZZZZ rbh
Protein containing DUF1814 {ECO:0000313|EMBL:EQD43463.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein rbh
Displaying items 1-30 of 31 in total

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