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scnpilot_solids2_trim150_scaffold_629

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_629_1
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1074)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DTS6_9GAMM rbh
hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
scnpilot_solids2_trim150_scaffold_629_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1133..1717)
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYF7_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ23409.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
scnpilot_solids2_trim150_scaffold_629_3
unknown

Not on your lists

comp(1776..1979)
DNA (204bp) protein (68aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_629_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2370..2936
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EI77_METSB
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EZP52365.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_629_5
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3008..3925
DNA (918bp) protein (306aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1265868 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EVB1_STRRM
scnpilot_solids2_trim150_scaffold_629_6
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3935..4612
DNA (678bp) protein (226aa)
Voltage-gated potassium channel n=1 Tax=Pseudomonas putida TRO1 RepID=N9W3L4_PSEPU rbh
Voltage-gated potassium channel {ECO:0000313|EMBL:ENY78061.1}; TaxID=1227924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida TRO1.;"
Voltage-gated potassium channel
scnpilot_solids2_trim150_scaffold_629_7
unknown

Not on your lists

comp(4836..5045)
DNA (210bp) protein (70aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_629_8
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5051..6307
DNA (1257bp) protein (419aa)
Uncharacterized protein n=31 Tax=Bordetella RepID=F4LH77_BORPC
hypothetical protein
Multidrug efflux system protein MdtL {ECO:0000313|EMBL:CRD95710.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
scnpilot_solids2_trim150_scaffold_629_9
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6544..7803)
DNA (1260bp) protein (420aa)
NODE_33, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96648.1}; EC=3.5.4.1 {ECO:0000313|EMBL:KIQ96648.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
amidohydrolase 3 id=12494315 bin=THIO_HI species=unknown genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
amidohydrolase 3
scnpilot_solids2_trim150_scaffold_629_10
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7815..9020)
DNA (1206bp) protein (402aa)
major facilitator superfamily protein id=12494316 bin=THIO_HI species=unknown genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
NODE_33, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96647.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
major facilitator superfamily protein
scnpilot_solids2_trim150_scaffold_629_11
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9123..9887)
DNA (765bp) protein (255aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3C9_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER61787.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_629_12
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9890..10630)
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3C0_ACIDE rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EER61032.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
short-chain dehydrogenase/reductase SDR rbh
scnpilot_solids2_trim150_scaffold_629_13
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10681..11532)
DNA (852bp) protein (284aa)
2,5-diketo-D-gluconic acid reductase n=1 Tax=Pedobacter agri RepID=UPI00029A0FA8
2,5-diketo-D-gluconic acid reductase {ECO:0000313|EMBL:KGO86522.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
methylglyoxal reductase
scnpilot_solids2_trim150_scaffold_629_14
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11559..11948)
DNA (390bp) protein (130aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T132_ACIDE
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EER61776.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_629_15
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11981..12790)
DNA (810bp) protein (270aa)
Carboxymuconolactone decarboxylase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T131_ACIDE
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EER61775.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Carboxymuconolactone decarboxylase
scnpilot_solids2_trim150_scaffold_629_16
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12867..13760
DNA (894bp) protein (298aa)
Putative transcriptional regulator, LysR family n=1 Tax=blood disease bacterium R229 RepID=G2ZT08_9RALS
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:CCA82171.1}; TaxID=741978 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="blood disease bacterium R229.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_629_17
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13966..15360
DNA (1395bp) protein (465aa)
pyridine nucleotide-disulfide oxidoreductase dimerisation region; K00520 mercuric reductase [EC:1.16.1.1]
Pyridine nucleotide-disulfide oxidoreductase dimerization region n=1 Tax=Nitratireductor indicus C115 RepID=K2P4J2_9RHIZ
Mercuric reductase {ECO:0000313|EMBL:KGJ12698.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
scnpilot_solids2_trim150_scaffold_629_18
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15392..15937)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI000344F1CC
Cytochrome B561 {ECO:0000313|EMBL:KAK45009.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
cytochrome B561
scnpilot_solids2_trim150_scaffold_629_19

Not on your lists

16111..16545
DNA (435bp) protein (145aa)
Transcriptional regulator, MerR family n=2 Tax=mine drainage metagenome RepID=T1A694_9ZZZZ
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EQD37385.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_629_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16538..19144
DNA (2607bp) protein (869aa)
Heavy metal translocating P-type ATPase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLL6_9GAMM
Cation transporter {ECO:0000313|EMBL:KGI78381.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
copper/silver-translocating P-type ATPase
scnpilot_solids2_trim150_scaffold_629_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19220..19771)
DNA (552bp) protein (184aa)
DSBA oxidoreductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDI3_9GAMM
DSBA oxidoreductase {ECO:0000313|EMBL:EIL97524.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
protein-disulfide isomerase
scnpilot_solids2_trim150_scaffold_629_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19768..20280)
DNA (513bp) protein (171aa)
AhpC/TSA family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDI4_9GAMM
AhpC/TSA family protein {ECO:0000313|EMBL:EIL97525.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peroxiredoxin
scnpilot_solids2_trim150_scaffold_629_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20353..20733)
DNA (381bp) protein (127aa)
TraR/DksA family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDI6_9GAMM
DnaK suppressor protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_629_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20755..21036)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU27_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02969.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_629_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21305..22624)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002EF89A4 rbh
NADH dehydrogenase, FAD-containing subunit rbh
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:AGG87387.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_629_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22937..24577)
DNA (1641bp) protein (547aa)
Putative transmembrane Na+/H+ antiport transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD88_9GAMM
Putative transmembrane Na+/H+ antiport transporter {ECO:0000313|EMBL:EIL97429.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Na+ antiporter
scnpilot_solids2_trim150_scaffold_629_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24813..26456)
DNA (1644bp) protein (548aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE41_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97732.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_629_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26574..27890)
DNA (1317bp) protein (439aa)
Carbohydrate-selective porin OprB n=1 Tax=Rhodanobacter denitrificans RepID=I4WUR2_9GAMM
carbohydrate-selective porin
Carbohydrate-selective porin {ECO:0000313|EMBL:AGG87267.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_629_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27894..29294)
DNA (1401bp) protein (467aa)
Alcohol dehydrogenase cytochrome c subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WUR3_9GAMM
cytochrome c, mono- and diheme variants family
Cytochrome c, mono-and diheme variants family {ECO:0000313|EMBL:AGG87268.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_629_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29291..30328)
DNA (1038bp) protein (346aa)
Glucose dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUR4_9GAMM
choline dehydrogenase-like flavoprotein
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:AGG87269.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 30 items

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