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scnpilot_solids2_trim150_scaffold_700

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_700_1
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178..612)
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U637_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDX35339.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_700_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(609..875)
DNA (267bp) protein (89aa)
prevent-host-death protein n=1 Tax=Sinorhizobium medicae RepID=UPI00037E418F
Prevent-host-death family protein {ECO:0000313|EMBL:BAR63253.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
prevent-host-death family protein
scnpilot_solids2_trim150_scaffold_700_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

969..2063
DNA (1095bp) protein (365aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK25_OLICO
Uncharacterized protein {ECO:0000313|EMBL:ETR79463.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_700_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2072..3241
DNA (1170bp) protein (390aa)
integrase n=1 Tax=Afipia birgiae RepID=UPI0002F1A3C1 rbh
Integrase {ECO:0000313|EMBL:ETR79462.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
integrase/recombinase protein
scnpilot_solids2_trim150_scaffold_700_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3536..4762
DNA (1227bp) protein (409aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFW1_NITHX rbh
cobyrinic acid a,c-diamide synthase rbh
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ABE64886.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_700_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4762..5772
DNA (1011bp) protein (337aa)
ParB family protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFW2_NITHX rbh
RepB plasmid partition rbh
ParB family protein {ECO:0000313|EMBL:ABE64885.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_700_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6030..7262
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NWQ5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32929.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
repC2; replication protein C
scnpilot_solids2_trim150_scaffold_700_8
unknown

Not on your lists

comp(7157..7822)
DNA (666bp) protein (222aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_700_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7873..8205
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NRD0_9BRAD
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
single-strand binding protein/primosomal replication protein n
scnpilot_solids2_trim150_scaffold_700_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8254..8625)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NUU2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32926.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_700_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8736..9029)
DNA (294bp) protein (98aa)
Helix-turn-helix domain protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQW2_OLICM
Transcriptional regulator {ECO:0000313|EMBL:ETR79456.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
helix-turn-helix domain-containing protein
scnpilot_solids2_trim150_scaffold_700_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9343..10572
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NWQ1_9BRAD rbh
Replication protein C {ECO:0000313|EMBL:ETR79455.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
replication initiation protein RepC
scnpilot_solids2_trim150_scaffold_700_13
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10615..11043)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3B9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETR79454.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_700_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11040..11741)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NRC6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32922.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
partitioning protein, ATPase; K03496 chromosome partitioning protein
scnpilot_solids2_trim150_scaffold_700_15
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12229..12657
DNA (429bp) protein (143aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=B6JK16_OLICO
Uncharacterized protein {ECO:0000313|EMBL:ETR79452.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_700_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12654..14969
DNA (2316bp) protein (772aa)
Conserved hypothethical protein, putative partition protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CAU9_METED
Uncharacterized protein {ECO:0000313|EMBL:ETR79451.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_700_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15013..15747)
DNA (735bp) protein (245aa)
Transcriptional regulator, LuxR family n=3 Tax=Oligotropha carboxidovorans RepID=F8BQW8_OLICM
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEI08212.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_700_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15863..16258)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E1747A
Cytochrome c2 {ECO:0000313|EMBL:EGP08397.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
cycA; cytochrome c550; K08738 cytochrome c
scnpilot_solids2_trim150_scaffold_700_19
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16282..17637)
DNA (1356bp) protein (452aa)
MoeA-like molybdopterin cofactor biosynthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003172C87
Molybdopterin biosynthesis enzyme {ECO:0000313|EMBL:EIG62867.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
scnpilot_solids2_trim150_scaffold_700_20
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17637..20141)
DNA (2505bp) protein (835aa)
Arsenite oxidase, large subunit {ECO:0000313|EMBL:ADH88601.1}; EC=1.20.9.1 {ECO:0000313|EMBL:ADH88601.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
arsenite oxidase large subunit (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1] rbh
arsenite oxidase large subunit n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F9BF7C rbh
scnpilot_solids2_trim150_scaffold_700_21
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20153..20674)
DNA (522bp) protein (174aa)
arsenite oxidase small subunit; K08355 arsenite oxidase small subunit [EC:1.20.9.1]
arsenite oxidase small subunit n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035CDD3B
Arsenite oxidase small subunit {ECO:0000313|EMBL:ABS69173.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_700_22
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20850..22169)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DA86D9
two component sigma-54 specific Fis family transcriptional regulator rbh
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ADH88603.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_700_23
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22159..23613)
DNA (1455bp) protein (485aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031227D3
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_700_24
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23618..24493)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031FA124
phosphate/phosphonate ABC transporter; K02044 phosphonate transport system substrate-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69170.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_700_25
unknown

Not on your lists

comp(24619..25215)
DNA (597bp) protein (199aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_700_26
unknown

Not on your lists

comp(25332..25535)
DNA (204bp) protein (68aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_700_27
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25532..26593)
DNA (1062bp) protein (354aa)
Arsenical-resistance protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAB3_OLICO
arsB1; arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
Putative arsenite efflux pump protein {ECO:0000313|EMBL:AEI05015.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_700_28
Ochrobactrum tritici, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26605..26940)
DNA (336bp) protein (112aa)
ArsR1 n=1 Tax=Ochrobactrum tritici RepID=A1XP68_9RHIZ
ArsR1 {ECO:0000313|EMBL:ABF22608.1}; TaxID=94626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum tritici.;"
regulatory protein ArsR
scnpilot_solids2_trim150_scaffold_700_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27112..28020
DNA (909bp) protein (303aa)
Protein tyrosine phosphatase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMD9_XANP2
protein tyrosine phosphatase
Protein tyrosine phosphatase {ECO:0000313|EMBL:ABS69182.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying 29 items

View Taxonomy