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scnpilot_solids2_trim150_scaffold_740

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_740_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..416
DNA (414bp) protein (138aa)
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92)
ATP-dependent Clp protease subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWQ1_9GAMM
ATP-dependent Clp protease subunit {ECO:0000313|EMBL:EIL91642.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_740_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(530..748)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=2 Tax=Rhodanobacter RepID=I4WY06_9GAMM
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_740_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(857..1132)
DNA (276bp) protein (92aa)
Putative polyhydroxyalkanoic acid system protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP9_9GAMM
Putative polyhydroxyalkanoic acid system protein {ECO:0000313|EMBL:EIL91640.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative polyhydroxyalkanoic acid system protein
scnpilot_solids2_trim150_scaffold_740_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1223..1990
DNA (768bp) protein (256aa)
FHA domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP8_9GAMM rbh
FHA domain-containing protein {ECO:0000313|EMBL:EIL91639.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
FHA domain-containing protein
scnpilot_solids2_trim150_scaffold_740_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2063..3163
DNA (1101bp) protein (367aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphoserine aminotransferase apoenzyme (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP7_9GAMM rbh
scnpilot_solids2_trim150_scaffold_740_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3257..4345
DNA (1089bp) protein (363aa)
chorismate mutase, clade 2 (EC:5.4.99.5 4.2.1.51)
Chorismate mutase, clade 2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP6_9GAMM rbh
Chorismate mutase, clade 2 {ECO:0000313|EMBL:EIL91637.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_740_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4342..5676
DNA (1335bp) protein (445aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP5_9GAMM rbh
scnpilot_solids2_trim150_scaffold_740_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5710..6489
DNA (780bp) protein (260aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP4_9GAMM rbh
3-deoxy-D-manno-octulosonate cytidylyltransferase
scnpilot_solids2_trim150_scaffold_740_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6527..8368
DNA (1842bp) protein (614aa)
UvrABC system protein C n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP3_9GAMM rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Excinuclease ABC subunit C rbh
scnpilot_solids2_trim150_scaffold_740_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8441..9052
DNA (612bp) protein (204aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP2_9GAMM rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EIL91633.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_740_trna_1
unknown

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9125..9197
DNA (73bp)
transferRNA Gly
scnpilot_solids2_trim150_scaffold_740_trna_2
unknown

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9327..9399
DNA (73bp)
transferRNA Gly
scnpilot_solids2_trim150_scaffold_740_trna_3
unknown

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9486..9556
DNA (71bp)
transferRNA Cys
scnpilot_solids2_trim150_scaffold_740_11

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10414..11058
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1ATP9_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EQD44064.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids2_trim150_scaffold_740_12
unknown

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11398..12333
DNA (936bp) protein (312aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_740_13
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12453..13619)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida H8234 RepID=R9V9Z7_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN81864.1}; TaxID=1331671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida H8234.;"
scnpilot_solids2_trim150_scaffold_740_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14099..16327)
DNA (2229bp) protein (743aa)
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP1_9GAMM rbh
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EIL91632.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_740_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16454..16840
DNA (387bp) protein (129aa)
Putative histone-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP0_9GAMM
Putative histone-like protein {ECO:0000313|EMBL:EIL91631.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
bacterial nucleoid DNA-binding protein
scnpilot_solids2_trim150_scaffold_740_trna_4
unknown

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comp(16952..17035)
DNA (84bp)
transferRNA Leu
scnpilot_solids2_trim150_scaffold_740_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17230..18465)
DNA (1236bp) protein (412aa)
Pheromone shutdown-related protein TraB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN9_9GAMM rbh
Pheromone shutdown-related protein TraB {ECO:0000313|EMBL:EIL91630.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pheromone shutdown-related protein TraB
scnpilot_solids2_trim150_scaffold_740_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18551..19441)
DNA (891bp) protein (297aa)
Putative amidohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN8_9GAMM rbh
Putative amidohydrolase {ECO:0000313|EMBL:EIL91629.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative amidohydrolase rbh
scnpilot_solids2_trim150_scaffold_740_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19500..20534)
DNA (1035bp) protein (345aa)
Peptidylarginine deiminase-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN7_9GAMM rbh
Peptidylarginine deiminase-like protein {ECO:0000313|EMBL:EIL91628.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidylarginine deiminase-like enzyme
scnpilot_solids2_trim150_scaffold_740_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20662..21021)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91627.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_740_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21216..23150
DNA (1935bp) protein (645aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN5_9GAMM rbh
ABC transporter ATPase {ECO:0000313|EMBL:EIL91626.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 rbh
scnpilot_solids2_trim150_scaffold_740_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23154..24074
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91625.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_740_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24035..25783
DNA (1749bp) protein (583aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] rbh
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN3_9GAMM rbh
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIL91624.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_740_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25846..26217
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91623.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF3478)
scnpilot_solids2_trim150_scaffold_740_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26204..27163)
DNA (960bp) protein (320aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2]
Phosphoenolpyruvate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN1_9GAMM
Phosphoenolpyruvate synthase {ECO:0000313|EMBL:EIL91622.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying 28 items

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