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scnpilot_solids2_trim150_scaffold_745

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_745_1
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..376)
DNA (375bp) protein (125aa)
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WGV3_VEREI
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein {ECO:0000313|EMBL:ABM56860.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
scnpilot_solids2_trim150_scaffold_745_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(465..1796)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
qseC; sensor protein QseC (EC:2.7.13.3) rbh
Sensor histidine kinase n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT0_OLICO rbh
scnpilot_solids2_trim150_scaffold_745_3
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1793..2455)
DNA (663bp) protein (221aa)
DNA-binding response regulator n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT1_OLICO
Transcriptional regulator {ECO:0000313|EMBL:EZQ14952.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
qseB; transcriptional regulatory protein QseB
scnpilot_solids2_trim150_scaffold_745_4
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2598..2996
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BPR5_OLICM
Uncharacterized protein {ECO:0000313|EMBL:EZQ14953.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_745_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3165..4559)
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Histidine kinase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IVF1_METNO rbh
histidine kinase rbh
scnpilot_solids2_trim150_scaffold_745_6
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4556..5248)
DNA (693bp) protein (231aa)
Two component transcriptional regulator n=2 Tax=Brucella RepID=E0DNG5_9RHIZ rbh
Two component transcriptional regulator {ECO:0000313|EMBL:EFM58803.1}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
winged helix family two component transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_745_7
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5390..5869
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Brucella sp. BO2 RepID=E2PQD1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EFM58802.1}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_745_8

Not on your lists

6378..6848
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6KV00_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:BAH89798.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Tat (Twin-arginine translocation) pathway signal sequence domain-containing protein
scnpilot_solids2_trim150_scaffold_745_9
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6861..9068
DNA (2208bp) protein (736aa)
sulfite reductase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
Oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX2_9RHIZ rbh
N-acetylglucosamine transferase {ECO:0000313|EMBL:EZQ13280.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
scnpilot_solids2_trim150_scaffold_745_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9049..10074
DNA (1026bp) protein (342aa)
Thiamine biosynthesis lipoprotein ApbE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5T2_9RHIZ rbh
Thiamine biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:EYR79381.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
apbE; thiamine biosynthesis lipoprotein ApbE; K03734 thiamine biosynthesis lipoprotein
scnpilot_solids2_trim150_scaffold_745_11
unknown

Not on your lists

10119..10361
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_745_12
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10638..11000)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F31983
Uncharacterized protein {ECO:0000313|EMBL:EFI52448.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_745_13
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11048..11944)
DNA (897bp) protein (299aa)
Peptidase U32 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3B9_9BRAD
Peptidase U32 {ECO:0000313|EMBL:EFI52449.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
peptidase U32
scnpilot_solids2_trim150_scaffold_745_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11987..12964)
DNA (978bp) protein (326aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-]
Peptidase U32 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3C0_9BRAD
Peptidase U32 {ECO:0000313|EMBL:EFI52450.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_745_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12955..13503)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HC4_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ08660.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
scnpilot_solids2_trim150_scaffold_745_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13615..15144
DNA (1530bp) protein (510aa)
carboxylyase-like protein; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] rbh
3-octaprenyl-4hydroxybenzoate decarboxylase {ECO:0000313|EMBL:ABD09161.1}; EC=4.1.1.- {ECO:0000313|EMBL:ABD09161.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
3-octaprenyl-4hydroxybenzoate decarboxylase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRJ9_RHOP2 rbh
scnpilot_solids2_trim150_scaffold_745_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15144..15734
DNA (591bp) protein (197aa)
decarboxylase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000373AC37
scnpilot_solids2_trim150_scaffold_745_18
unknown

Not on your lists

comp(15931..16119)
DNA (189bp) protein (63aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_745_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16438..18813)
DNA (2376bp) protein (792aa)
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobac
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHA8_NITHX rbh
scnpilot_solids2_trim150_scaffold_745_20
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19334..20185
DNA (852bp) protein (284aa)
Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT9_9GAMM
Carboxyvinyl-carboxyphosphonate phosphorylmutase {ECO:0000313|EMBL:EXL07940.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
PEP phosphonomutase-like enzyme
scnpilot_solids2_trim150_scaffold_745_21
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(20235..20705)
DNA (471bp) protein (157aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXK9_OPITP
alkylhydroperoxidase
scnpilot_solids2_trim150_scaffold_745_22
unknown

Not on your lists

comp(20861..21127)
DNA (267bp) protein (89aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_745_23
unknown

Not on your lists

21518..21748
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_745_24
unknown

Not on your lists

21729..21926
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_745_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22114..22428
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V726_9BRAD
Putative DMT superfamily transporter inner membrane protein {ECO:0000313|EMBL:CEG09510.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
integral membrane protein
scnpilot_solids2_trim150_scaffold_745_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22895..23521
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAK1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07561.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_745_27
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23597..24208
DNA (612bp) protein (204aa)
gst1; glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18]
Putative glutathione S-transferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2R4_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EZQ15002.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
scnpilot_solids2_trim150_scaffold_745_28
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24225..24560
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J7N0_NITOC
Uncharacterized protein {ECO:0000313|EMBL:EZQ15011.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_745_29
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25010..25543)
DNA (534bp) protein (178aa)
Transposase IS3 n=1 Tax=Ochrobactrum intermedium 229E RepID=U4V4M9_9RHIZ rbh
Integrase {ECO:0000313|EMBL:KFG71046.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
transposase B
scnpilot_solids2_trim150_scaffold_745_30
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25567..25845)
DNA (279bp) protein (93aa)
UPI0003D03520 related cluster n=1 Tax=unknown RepID=UPI0003D03520
Uncharacterized protein {ECO:0000313|EMBL:ESZ60210.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
transposase, IS3/IS911 family
Displaying items 1-30 of 33 in total

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