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scnpilot_solids2_trim150_scaffold_748

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_748_1
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..535
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WTB0_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:KIN92620.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_748_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

532..915
DNA (384bp) protein (128aa)
Single-stranded DNA-binding protein n=14 Tax=Proteobacteria RepID=A2SIA8_METPP
single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070, ECO:0000313|EMBL:KIL06466.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
scnpilot_solids2_trim150_scaffold_748_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1210..3225
DNA (2016bp) protein (672aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518};; TaxID=1306165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa MH27.;"
DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2] rbh
DNA topoisomerase III n=1 Tax=Pseudomonas aeruginosa MH27 RepID=V6AJY9_PSEAI rbh
scnpilot_solids2_trim150_scaffold_748_4
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4005..4241
DNA (237bp) protein (79aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=F8H1X5_PSEUT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ04466.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
scnpilot_solids2_trim150_scaffold_748_5
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4267..4659
DNA (393bp) protein (131aa)
Uncharacterized protein n=18 Tax=Proteobacteria RepID=A1W820_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EWC41179.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
scnpilot_solids2_trim150_scaffold_748_6
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4910..5626
DNA (717bp) protein (239aa)
ABC transporter substrate-binding protein n=1 Tax=Pseudomonas putida RepID=UPI0002FF4482 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJW44616.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_748_7
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5917..6714
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa MH27 RepID=V6AKA4_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDH79084.1}; TaxID=1306165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa MH27.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_748_8
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6780..6992
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5A9_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI07503.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_748_9
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7205..9151)
DNA (1947bp) protein (649aa)
hypothetical protein n=1 Tax=Pseudomonas RepID=UPI0003821A38
PA-phosphatase {ECO:0000313|EMBL:GAO35504.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
PA-phosphatase-like phosphoesterase
scnpilot_solids2_trim150_scaffold_748_10
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9261..10463)
DNA (1203bp) protein (401aa)
Major facilitator superfamily MFS_1 n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BHR9_RALP1
major facilitator superfamily protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_52_10_curated
scnpilot_solids2_trim150_scaffold_748_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10460..13567)
DNA (3108bp) protein (1036aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEB5_GALCS
CzcA family heavy metal efflux pump {ECO:0000313|EMBL:GAO22082.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
CzcA family heavy metal efflux pump
scnpilot_solids2_trim150_scaffold_748_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13577..14734)
DNA (1158bp) protein (386aa)
Secretion protein HlyD {ECO:0000313|EMBL:GAO22083.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Efflux transporter, RND family, MFP subunit id=1332410 bin=GWE1_T_denit_62_9 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
scnpilot_solids2_trim150_scaffold_748_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15096..16034)
DNA (939bp) protein (313aa)
Outer membrane efflux protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SIM8_GALCS
Outer membrane efflux protein {ECO:0000313|EMBL:GAO22084.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
outer membrane efflux protein
scnpilot_solids2_trim150_scaffold_748_14
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16043..17530)
DNA (1488bp) protein (496aa)
Glycosyl transferase family 39 n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XBG7_METSD rbh
glycosyl transferase family protein rbh
Glycosyl transferase family 39 {ECO:0000313|EMBL:ACT51937.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
scnpilot_solids2_trim150_scaffold_748_15
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17527..18540)
DNA (1014bp) protein (338aa)
CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase (EC:2.4.1.83) rbh
Glycosyl transferase, family 2 {ECO:0000313|EMBL:CAL61765.1}; EC=2.4.1.- {ECO:0000313|EMBL:CAL61765.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Glycosyl transferase, family 2 n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G5H8_HERAR rbh
scnpilot_solids2_trim150_scaffold_748_16
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18537..18938)
DNA (402bp) protein (134aa)
GtrA family protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DLM2_9GAMM
Polysaccharide synthesis protein GtrA {ECO:0000313|EMBL:AHE97810.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
GtrA family protein
scnpilot_solids2_trim150_scaffold_748_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19213..20571)
DNA (1359bp) protein (453aa)
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037F7CA9
scnpilot_solids2_trim150_scaffold_748_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20606..21301)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036F84F0
Transcriptional activator protein czcR {ECO:0000313|EMBL:CDQ12289.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
two component heavy metal response winged helix family transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
scnpilot_solids2_trim150_scaffold_748_19
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21357..21674)
DNA (318bp) protein (106aa)
hypothetical protein; K09771 hypothetical protein id=12495455 bin=THIO_HI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
UPF0060 membrane protein Y695_00958 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein; K09771 hypothetical protein
scnpilot_solids2_trim150_scaffold_748_20
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21671..22654)
DNA (984bp) protein (328aa)
cation diffusion facilitator family transporter id=12495454 bin=THIO_HI species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ENO82004.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
cation diffusion facilitator family transporter rbh
scnpilot_solids2_trim150_scaffold_748_21
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22663..22941)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C5D8E
Uncharacterized protein {ECO:0000313|EMBL:ENO97989.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_748_22
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23413..23964
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6YGY0_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO79239.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_748_23
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24020..24631
DNA (612bp) protein (204aa)
Uncharacterized protein n=4 Tax=Pseudomonas aeruginosa RepID=U8BS41_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:CEI17343.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_748_24
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24721..25086
DNA (366bp) protein (122aa)
Uncharacterized protein n=4 Tax=Pseudomonas RepID=F8H1Y2_PSEUT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFJ91537.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
scnpilot_solids2_trim150_scaffold_748_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25171..25821
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380517B rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD42584.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_solids2_trim150_scaffold_748_26
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25887..26912
DNA (1026bp) protein (342aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=F8H1Y4_PSEUT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEJ04475.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
Displaying 26 items

View Taxonomy