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scnpilot_solids2_trim150_scaffold_755

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_755_1
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..105
DNA (105bp) protein (35aa)
aldehyde dehydrogenase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E62D89
Aldehyde dehydrogenase {ECO:0000313|EMBL:KFN48032.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
piperideine-6-carboxylate dehydrogenase
scnpilot_solids2_trim150_scaffold_755_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262..561
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W468_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94259.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_755_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

567..1628
DNA (1062bp) protein (354aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W465_9GAMM
dihydroorotate dehydrogenase, subfamily 2
scnpilot_solids2_trim150_scaffold_755_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1618..2706
DNA (1089bp) protein (363aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ2_9GAMM
scnpilot_solids2_trim150_scaffold_755_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2813..4978
DNA (2166bp) protein (722aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Polyphosphate kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHF3_9GAMM
polyphosphate kinase 1
scnpilot_solids2_trim150_scaffold_755_trna_2
unknown

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comp(5226..5298)
DNA (73bp)
transferRNA Ala
scnpilot_solids2_trim150_scaffold_755_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5394..6539)
DNA (1146bp) protein (382aa)
Ribonuclease D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDD4_9GAMM
Ribonuclease D {ECO:0000313|EMBL:EIL97475.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonuclease D
scnpilot_solids2_trim150_scaffold_755_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6654..8600
DNA (1947bp) protein (649aa)
Sulfatase-modifying factor protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W063_9GAMM
Sulfatase-modifying factor protein {ECO:0000313|EMBL:EIL92854.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_755_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8685..9644)
DNA (960bp) protein (320aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Thioredoxin reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXA4_9GAMM
thioredoxin-disulfide reductase
scnpilot_solids2_trim150_scaffold_755_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9852..10916
DNA (1065bp) protein (355aa)
L-alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W730_9GAMM
Alanine dehydrogenase {ECO:0000313|EMBL:EIL95271.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_755_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10949..13273
DNA (2325bp) protein (775aa)
DNA segregation ATPase FtsK n=1 Tax=Rhodanobacter denitrificans RepID=I4WXA6_9GAMM
Cell division protein FtsK {ECO:0000313|EMBL:AHX13575.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
DNA segregation ATPase, FtsK/SpoIIIE family
scnpilot_solids2_trim150_scaffold_755_11
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13333..15045
DNA (1713bp) protein (571aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360FE89 rbh
sulfate transporter; K03321 sulfate permease, SulP family rbh
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids2_trim150_scaffold_755_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15157..15822
DNA (666bp) protein (222aa)
Lipoprotein chaperone n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDN2_9GAMM
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
periplasmic chaperone LolA
scnpilot_solids2_trim150_scaffold_755_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15876..17222
DNA (1347bp) protein (449aa)
Recombination factor protein RarA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXB6_9GAMM
Recombination factor protein RarA {ECO:0000313|EMBL:EIL92996.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATPase; K07478 putative ATPase
scnpilot_solids2_trim150_scaffold_755_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17331..18611
DNA (1281bp) protein (427aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W737_9GAMM
scnpilot_solids2_trim150_scaffold_755_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18670..19074
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W738_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95279.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_755_16
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19280..19771
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y0Z7_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP36578.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
scnpilot_solids2_trim150_scaffold_755_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19803..20183
DNA (381bp) protein (127aa)
C4-type zinc finger protein, DksA/TraR family n=2 Tax=Nitrosococcus oceani RepID=Q3J9M4_NITOC
C4-type zinc finger DksA/TraR family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
scnpilot_solids2_trim150_scaffold_755_trna_1
unknown

Not on your lists

20465..20551
DNA (87bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_755_18
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20725..21702
DNA (978bp) protein (326aa)
Nitrilase n=2 Tax=Gluconobacter oxydans RepID=K7SIB4_GLUOY rbh
nitrilase rbh
Nitrilase {ECO:0000313|EMBL:AFW03099.1}; TaxID=1224746 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans H24.;"
scnpilot_solids2_trim150_scaffold_755_19
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21855..22496)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D9F190
FOG: WD40-like repeat {ECO:0000313|EMBL:CDY75149.1}; Uncharacterized protein {ECO:0000313|EMBL:KDR42695.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_755_20
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22506..24005)
DNA (1500bp) protein (500aa)
Tetratricopeptide TPR_4 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFX0_SPHWW rbh
tetratricopeptide domain-containing protein rbh
Tetratricopeptide TPR_4 {ECO:0000313|EMBL:ABQ71186.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_755_21
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24120..24812
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NWX6_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF42354.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_755_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

24921..25901
DNA (981bp) protein (327aa)
ABC transporter substrate-binding protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B65358
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:AHG92539.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hemin ABC transporter periplasmic protein; K02016 iron complex transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_755_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

26031..26783
DNA (753bp) protein (251aa)
Transport system permease protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QP08_SPILD
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AHG92538.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
transporter permease; K02015 iron complex transport system permease protein
Displaying 25 items

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