ggKbase home page

scnpilot_solids2_trim150_scaffold_786

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_786_1
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..1048
DNA (1047bp) protein (349aa)
quinol:cytochrome C oxidoreductase n=1 Tax=Niabella aurantiaca RepID=UPI00036824BC
Quinol:cytochrome C oxidoreductase {ECO:0000313|EMBL:KIC91105.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
quinol:cytochrome c oxidoreductase quinone-binding subunit 2
scnpilot_solids2_trim150_scaffold_786_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1240..2283
DNA (1044bp) protein (348aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF78_NIAKG
scnpilot_solids2_trim150_scaffold_786_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2332..4143
DNA (1812bp) protein (604aa)
cytochrome c oxidase subunit I; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome C oxidase n=1 Tax=Segetibacter koreensis RepID=UPI0003656FE9
Cytochrome C oxidase {ECO:0000313|EMBL:KIC96461.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids2_trim150_scaffold_786_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4225..5184
DNA (960bp) protein (320aa)
Protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FAE79
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_786_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5210..5776
DNA (567bp) protein (189aa)
cytochrome C oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase subunit III n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG35_CHIPD
Cytochrome oxidase subunit III {ECO:0000313|EMBL:KIC91109.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_786_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5923..6657
DNA (735bp) protein (245aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase subunit III n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF82_NIAKG
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:GAO42183.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids2_trim150_scaffold_786_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6706..7158
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036C8A13
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02703.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_786_8
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7229..7942
DNA (714bp) protein (238aa)
electron transporter SenC n=1 Tax=Niabella aurantiaca RepID=UPI000368C0B2
Electron transporter SenC {ECO:0000313|EMBL:KIC91111.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
electron transport protein SCO1/SenC; K07152
scnpilot_solids2_trim150_scaffold_786_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7955..8557
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG66_NIAKG
hypothetical protein; K08976 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02705.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_786_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8564..8947)
DNA (384bp) protein (128aa)
Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG69_NIAKG
methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; K07443 methylated-DNA-protein-cysteine methyltransferase related protein
Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein {ECO:0000313|EMBL:AEW02708.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_786_11
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9146..12565
DNA (3420bp) protein (1140aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F595C
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KIC91203.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
PKD domain-containing protein
scnpilot_solids2_trim150_scaffold_786_12
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12897..14666)
DNA (1770bp) protein (590aa)
Outer membrane protein n=4 Tax=Bacteroidales RepID=D7ITS4_9BACE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKN22971.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
RagB/SusD domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_786_13
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14678..18352)
DNA (3675bp) protein (1225aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Parabacteroides RepID=K6AHB9_9PORP rbh
Membrane protein {ECO:0000313|EMBL:EFI08223.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
TonB-dependent receptor plug rbh
scnpilot_solids2_trim150_scaffold_786_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18563..19747)
DNA (1185bp) protein (395aa)
Putative anti-sigma factor {ECO:0000313|EMBL:GAO42041.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
FecR protein id=4652657 bin=GWF2_Bacteroidetes_40_14 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
anti-FecI sigma factor FecR
scnpilot_solids2_trim150_scaffold_786_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19936..20499)
DNA (564bp) protein (188aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGW9_NIAKG
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO42042.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ECF subfamily RNA polymerase sigma-24 subunit
scnpilot_solids2_trim150_scaffold_786_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20773..21204)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037B729B
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:KIC95131.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
BadM/Rrf2 family transcriptional regulator
scnpilot_solids2_trim150_scaffold_786_17
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21208..21531)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037285E6
FeS assembly SUF system protein SufT {ECO:0000313|EMBL:KIC89574.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_786_18
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21528..22817)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002D4CD8F rbh
Uncharacterized protein {ECO:0000313|EMBL:AHM62708.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_786_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22819..23622)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368937D
Uncharacterized protein {ECO:0000313|EMBL:GAO42691.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_786_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23624..24067)
DNA (444bp) protein (148aa)
Putative lipoprotein n=1 Tax=Bizionia argentinensis JUB59 RepID=G2E9K6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIC89571.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_786_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24209..25678)
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034CDBA6
Hemerythrin {ECO:0000313|EMBL:KIC89570.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
iron-sulfur cluster repair di-iron protein rbh
Displaying 21 items

View Taxonomy