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scnpilot_solids2_trim150_scaffold_795

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_795_1
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..126)
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA026 RepID=U8N852_PSEAI
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:EQL42055.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
Hypothetical Protein
scnpilot_solids2_trim150_scaffold_795_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142..1776)
DNA (1635bp) protein (545aa)
Integrating conjugative element ParB n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5L8P4_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23779.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_795_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1769..2017)
DNA (249bp) protein (83aa)
UPI0003D3C1A9 related cluster n=1 Tax=unknown RepID=UPI0003D3C1A9
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:GAD24677.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_795_4
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2001..2876)
DNA (876bp) protein (292aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5LBQ2_PSEAI
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:KDD61880.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
chromosome partitioning related protein; K12055 chromosome partitioning related protein ParA rbh
scnpilot_solids2_trim150_scaffold_795_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2918..3130)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HZ95_PSEAI
Transcriptional regulator {ECO:0000313|EMBL:EQL42059.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
alpA3; transcriptional regulator; K07733 prophage regulatory protein
scnpilot_solids2_trim150_scaffold_795_6
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3249..4004)
DNA (756bp) protein (252aa)
Uncharacterized protein n=3 Tax=Xylella fastidiosa RepID=Q9PCJ2_XYLFA rbh
hypothetical protein rbh
Receptor protein-tyrosine kinase {ECO:0000313|EMBL:ETE31657.1}; TaxID=1214121 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa 32.;"
scnpilot_solids2_trim150_scaffold_795_7
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4446..4934
DNA (489bp) protein (163aa)
Uncharacterized protein n=46 Tax=Proteobacteria RepID=A1W5L7_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD56213.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
scnpilot_solids2_trim150_scaffold_795_8
unknown

Not on your lists

comp(4875..5054)
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_795_9
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5954..6196)
DNA (243bp) protein (81aa)
conjugal transfer protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F3A434
Conjugal transfer protein {ECO:0000313|EMBL:BAP44847.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_795_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6193..7458)
DNA (1266bp) protein (422aa)
Conjugation TrbI family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W9W8_ACISJ rbh
Conjugative transfer protein TrbI {ECO:0000313|EMBL:AIJ47384.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10 rbh
scnpilot_solids2_trim150_scaffold_795_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7461..8465)
DNA (1005bp) protein (335aa)
P-type conjugative transfer protein TrbG n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P833_PSEAI rbh
p-type conjugative transfer protein TrbG {ECO:0000313|EMBL:GAO26453.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
p-type conjugative transfer protein trbg rbh
scnpilot_solids2_trim150_scaffold_795_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8462..9166)
DNA (705bp) protein (235aa)
Conjugal transfer protein n=2 Tax=Comamonadaceae RepID=A9BTR6_DELAS rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:GAO21052.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
scnpilot_solids2_trim150_scaffold_795_13
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9197..10564)
DNA (1368bp) protein (456aa)
P-type conjugative transfer protein TrbL n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UAH9_RALPJ
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AIJ47387.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
scnpilot_solids2_trim150_scaffold_795_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10576..11331)
DNA (756bp) protein (252aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MII9_ACIET
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KIL06316.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
conjugal transfer protein Trbj
scnpilot_solids2_trim150_scaffold_795_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11328..13799)
DNA (2472bp) protein (824aa)
VirB4 family type IV secretion/conjugal transfer ATPase n=4 Tax=Pseudomonas aeruginosa RepID=N2D3B7_PSEAI
Conjugal transfer protein TrbE {ECO:0000313|EMBL:KIZ32666.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
cage, trbe, virb component of type iv transporter system, conserved region protein; K03199 type IV secretion system protein VirB4
scnpilot_solids2_trim150_scaffold_795_16
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13809..14060)
DNA (252bp) protein (84aa)
Conjugal transfer protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HVM0_PSEUO
putative conjugal transfer trbD transmembrane protein; K03198 type IV secretion system protein VirB3
Type IV secretory pathway, VirB3-like protein {ECO:0000313|EMBL:KCB37746.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
scnpilot_solids2_trim150_scaffold_795_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14090..14473)
DNA (384bp) protein (128aa)
TrbC-like protein n=3 Tax=Pseudomonas aeruginosa RepID=U8YSE5_PSEAI
Type IV secretory pathway protein {ECO:0000313|EMBL:ACD39031.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
trbC; Conjugative transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_solids2_trim150_scaffold_795_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14470..15519)
DNA (1050bp) protein (350aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV34_ALIDB rbh
p-type conjugative transfer atpase trbb; K03196 type IV secretion system protein VirB11 rbh
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ADV00566.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids2_trim150_scaffold_795_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15516..15992)
DNA (477bp) protein (159aa)
Hypothetical ribbon-helix-helix harboring protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XW90_RALSO
CopG/DNA-binding domain-containing protein {ECO:0000313|EMBL:GAO26444.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_795_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15989..17986)
DNA (1998bp) protein (666aa)
Conjugal transfer coupling protein TraG n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WC06_PSEAI
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:GAO26443.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
traG1; conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
scnpilot_solids2_trim150_scaffold_795_21
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18210..18470)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C091_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22007.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
putative lipoprotein
scnpilot_solids2_trim150_scaffold_795_22
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18470..19393)
DNA (924bp) protein (308aa)
Putative LysR family transcriptional regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0C090_9BURK rbh
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:EHL22006.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_795_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19419..22538)
DNA (3120bp) protein (1040aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI3_ALIDB rbh
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:GAO21820.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
heavy metal efflux pump, czca family; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA rbh
scnpilot_solids2_trim150_scaffold_795_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22535..24016)
DNA (1482bp) protein (494aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI4_ALIDB rbh
efflux transporter, rnd family, mfp subunit; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADV00458.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids2_trim150_scaffold_795_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24031..25347)
DNA (1317bp) protein (439aa)
CzcC family heavy metal RND efflux outer membrane protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI5_ALIDB rbh
czcc family heavy metal rnd efflux outer membrane protein rbh
CzcC family heavy metal RND efflux outer membrane protein {ECO:0000313|EMBL:ADV00459.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids2_trim150_scaffold_795_26
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25423..25623)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9S1_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84571.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Displaying 26 items

View Taxonomy