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scnpilot_solids2_trim150_scaffold_830

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_830_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..1224)
DNA (1224bp) protein (408aa)
Membrane protein insertase YidC n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB7_9GAMM
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
preprotein translocase subunit YidC
scnpilot_solids2_trim150_scaffold_830_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1288..1692)
DNA (405bp) protein (135aa)
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=2 Tax=Rhodanobacter denitrificans RepID=M4NUB6_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_830_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1707..1841)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB5_9GAMM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosomal protein L34
scnpilot_solids2_trim150_scaffold_830_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2035..3369
DNA (1335bp) protein (445aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB4_9GAMM rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
chromosomal replication initiator protein DnaA
scnpilot_solids2_trim150_scaffold_830_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3614..4714
DNA (1101bp) protein (367aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB3_9GAMM rbh
scnpilot_solids2_trim150_scaffold_830_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4810..5889
DNA (1080bp) protein (360aa)
DNA replication and repair protein RecF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB2_9GAMM rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA replication and repair protein RecF
scnpilot_solids2_trim150_scaffold_830_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5983..8415
DNA (2433bp) protein (811aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB1_9GAMM rbh
scnpilot_solids2_trim150_scaffold_830_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8572..9858
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90801.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_830_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10072..10731
DNA (660bp) protein (220aa)
TonB family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA15_9GAMM rbh
TonB family protein rbh
TonB family protein {ECO:0000313|EMBL:AGG87194.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_830_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10787..11560
DNA (774bp) protein (258aa)
Biopolymer transport protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA03_9GAMM rbh
biopolymer transport protein rbh
Biopolymer transport protein {ECO:0000313|EMBL:AGG87195.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_830_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11572..11994
DNA (423bp) protein (141aa)
Biopolymer transport ExbD1 protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA7_9GAMM
Biopolymer transport ExbD1 protein {ECO:0000313|EMBL:EIL90798.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
biopolymer transport protein
scnpilot_solids2_trim150_scaffold_830_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12031..12405
DNA (375bp) protein (125aa)
Biopolymer transport protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA6_9GAMM
Biopolymer transport protein {ECO:0000313|EMBL:EIL90797.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
biopolymer transport protein
scnpilot_solids2_trim150_scaffold_830_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12491..13234)
DNA (744bp) protein (248aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
Pyridoxine 5'-phosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA5_9GAMM rbh
scnpilot_solids2_trim150_scaffold_830_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13341..13985)
DNA (645bp) protein (215aa)
Phosphopantetheinyl transferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA4_9GAMM rbh
Phosphopantetheinyl transferase {ECO:0000313|EMBL:EIL90795.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphopantetheinyl transferase
scnpilot_solids2_trim150_scaffold_830_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14065..17529
DNA (3465bp) protein (1155aa)
Autoinducer sensor histidine kinase / transmembrane transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA3_9GAMM rbh
Autoinducer sensor histidine kinase / transmembrane transporter {ECO:0000313|EMBL:EIL90794.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Na+/proline symporter
scnpilot_solids2_trim150_scaffold_830_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17546..18991)
DNA (1446bp) protein (482aa)
Glutamate synthase subunit beta {ECO:0000313|EMBL:EIL90793.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EIL90793.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
gltD; glutamate synthase small subunit oxidoreductase (EC:1.4.1.13); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14] rbh
Glutamate synthase subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA2_9GAMM rbh
scnpilot_solids2_trim150_scaffold_830_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19008..23711)
DNA (4704bp) protein (1568aa)
Glutamate synthase, large subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA1_9GAMM rbh
Glutamate synthase, large subunit {ECO:0000313|EMBL:EIL90792.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glutamine amidotransferases class-II family protein rbh
scnpilot_solids2_trim150_scaffold_830_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23850..24521)
DNA (672bp) protein (224aa)
LuxR family two component transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA0_9GAMM rbh
LuxR family two component transcriptional regulator {ECO:0000313|EMBL:EIL90791.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids2_trim150_scaffold_830_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24643..24825)
DNA (183bp) protein (61aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetyl-coenzyme A synthetase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU99_9GAMM
Displaying 19 items

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