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scnpilot_solids2_trim150_scaffold_838

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_838_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..479
DNA (477bp) protein (159aa)
nicotinate phosphoribosyltransferase (EC:2.4.2.11); K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Nicotinate phosphoribosyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2A1_STAND
scnpilot_solids2_trim150_scaffold_838_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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566..1801
DNA (1236bp) protein (412aa)
Extracellular ligand-binding receptor n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKN5_METNO rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ACL56242.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_838_3
bacterium YEK0313, Bacteria

Not on your lists

1993..3858
DNA (1866bp) protein (622aa)
Inner-membrane translocator n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKN6_METNO rbh
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ10016.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_838_4
bacterium YEK0313, Bacteria

Not on your lists

3855..4631
DNA (777bp) protein (259aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKN7_METNO rbh
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEJ10017.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_838_5
bacterium YEK0313, Bacteria

Not on your lists

4628..5344
DNA (717bp) protein (239aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKN8_METNO rbh
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ10018.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_838_6
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5442..6680
DNA (1239bp) protein (413aa)
Putative D-amino-acid dehydrogenase, FAD dependent {ECO:0000313|EMBL:CCE04358.1}; EC=1.4.99.1 {ECO:0000313|EMBL:CCE04358.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative D-amino-acid dehydrogenase, FAD dependent n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TD20_9BRAD rbh
putative D-amino-acid dehydrogenase, FAD dependent rbh
scnpilot_solids2_trim150_scaffold_838_7
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6765..7763
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E8E7D5
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09745.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
diguanylate cyclase
scnpilot_solids2_trim150_scaffold_838_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7748..9010)
DNA (1263bp) protein (421aa)
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y7S2_9RHIZ rbh
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KFC74103.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_838_9
bacterium YEK0313, Bacteria

Not on your lists

comp(9093..9866)
DNA (774bp) protein (258aa)
Oxidoreductase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFR4_MOBAS
Levodione reductase {ECO:0000313|EMBL:CEJ15709.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_838_10
bacterium YEK0313, Bacteria

Not on your lists

comp(9863..10897)
DNA (1035bp) protein (345aa)
Aminoglycoside phosphotransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKC8_9RHIZ
Putative aminoglycoside phosphotransferase {ECO:0000313|EMBL:CEJ15710.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
aminoglycoside phosphotransferase; K06979
scnpilot_solids2_trim150_scaffold_838_11
bacterium YEK0313, Bacteria

Not on your lists

comp(10906..12126)
DNA (1221bp) protein (407aa)
Acyl-CoA dehydrogenase n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G2R5_9RHIZ
(R)-benzylsuccinyl-CoA dehydrogenase {ECO:0000313|EMBL:CEJ15711.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
acyl-CoA dehydrogenase-like protein
scnpilot_solids2_trim150_scaffold_838_12
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12123..12620)
DNA (498bp) protein (166aa)
Nodulation protein N, putative n=6 Tax=Brucella suis RepID=G8NKC3_BRUSS
Nodulation protein N {ECO:0000313|EMBL:KDP93802.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
nodulation protein N
scnpilot_solids2_trim150_scaffold_838_13
bacterium YEK0313, Bacteria

Not on your lists

comp(12622..13440)
DNA (819bp) protein (273aa)
Putative oxidoreductase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFR0_MOBAS rbh
Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:CEJ15720.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short chain dehydrogenase/reductase oxidoreductase rbh
scnpilot_solids2_trim150_scaffold_838_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13694..15289
DNA (1596bp) protein (532aa)
ggt; gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
Gamma-glutamyltranspeptidase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BY15_RHILT rbh
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:EJC75292.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
scnpilot_solids2_trim150_scaffold_838_15
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15432..16214
DNA (783bp) protein (261aa)
Candidate ABC type branched chain amino acid transport systems, ATP-binding component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZR3_RAMTT
branched chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
Candidate ABC type branched chain amino acid transport systems, ATP-binding component {ECO:0000313|EMBL:AEG92092.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_solids2_trim150_scaffold_838_16
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16214..16918
DNA (705bp) protein (235aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Polaromonas sp. CF318 RepID=J3D1G8_9BURK rbh
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) {ECO:0000313|EMBL:CDS53524.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_838_17
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16945..18156
DNA (1212bp) protein (404aa)
ABC transporter periplasmic substrate binding protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0S8F8_9BRAD rbh
ABC transporter periplasmic substrate binding protein {ECO:0000313|EMBL:CCE01202.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_838_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18224..19108
DNA (885bp) protein (295aa)
Inner-membrane translocator n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLS7_9BURK
Inner-membrane translocator {ECO:0000313|EMBL:EGJ09295.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_838_19
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19112..20101
DNA (990bp) protein (330aa)
Candidate ABC type branched chain amino acid transport systems, permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZQ9_RAMTT rbh
branched chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
Candidate ABC type branched chain amino acid transport systems, permease component {ECO:0000313|EMBL:AEG92088.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_solids2_trim150_scaffold_838_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20108..20581)
DNA (474bp) protein (158aa)
Transcriptional regulator, AsnC family n=1 Tax=Rhodovulum sp. PH10 RepID=J6J253_9RHOB
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KFC72845.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AsnC family transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_838_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20948..22189
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D3647B rbh
Putative oxalate/formate antiporter {ECO:0000313|EMBL:KFC73910.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
major facilitator superfamily protein rbh
scnpilot_solids2_trim150_scaffold_838_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22221..22844
DNA (624bp) protein (208aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
O-6-methylguanine DNA methyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2GW85_9CAUL
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:KFC73946.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_838_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22953..23306)
DNA (354bp) protein (118aa)
DNA methyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXG4_9GAMM
DNA methyltransferase {ECO:0000313|EMBL:EIL91905.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_838_24
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23415..24695)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000366B43B rbh
3-hydroxybutyryl-CoA dehydrogenase rbh
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:BAL25702.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Displaying 24 items

View Taxonomy