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scnpilot_solids2_trim150_scaffold_874

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_874_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..608)
DNA (606bp) protein (202aa)
thiamine biosynthesis protein ThiF n=1 Tax=Methylobacterium sp. 77 RepID=UPI000376E72B
UBA/THIF-type NAD/FAD binding protein
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:ACL59609.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_874_2
unknown

Not on your lists

comp(618..827)
DNA (210bp) protein (70aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_874_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

859..2091
DNA (1233bp) protein (411aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] rbh
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
argininosuccinate synthase n=1 Tax=Xanthobacteraceae RepID=UPI000372DE95 rbh
scnpilot_solids2_trim150_scaffold_874_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2246..3469)
DNA (1224bp) protein (408aa)
Glycosyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YP99_9RHIZ rbh
Glycosyltransferase {ECO:0000313|EMBL:EIM25791.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
group 1 glycosyl transferase rbh
scnpilot_solids2_trim150_scaffold_874_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3558..4334
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI000368384F rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:KFC74186.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_874_6
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4321..4596)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGY4_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS67277.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_874_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4653..5081)
DNA (429bp) protein (143aa)
Molecular chaperone (Small heat shock protein) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU04_9RHIZ
Heat shock protein Hsp20 {ECO:0000313|EMBL:KFC74184.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
heat shock protein Hsp20
scnpilot_solids2_trim150_scaffold_874_8
Rhodobacterales bacterium HTCC2255, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5259..5519)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FGC7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAU52712.1}; TaxID=367336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium HTCC2255.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_874_9
bacterium YEK0313, Bacteria

Not on your lists

5643..6113
DNA (471bp) protein (157aa)
Transcription regulator AsnC-type-like protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T771_MESCW
Leucine-responsive regulatory protein {ECO:0000313|EMBL:CEJ10011.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcriptional regulator AsnC-type-like protein; K05800 Lrp/AsnC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_874_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6245..7276)
DNA (1032bp) protein (344aa)
L-idonate 5-dehydrogenase, NAD-binding protein {ECO:0000313|EMBL:KFC61224.1}; EC=1.1.1.264 {ECO:0000313|EMBL:KFC61224.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
idnD; L-idonate 5-dehydrogenase (EC:1.1.1.264); K00098 L-idonate 5-dehydrogenase [EC:1.1.1.264] rbh
L-idonate 5-dehydrogenase, NAD-binding n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YP50_BRASO rbh
scnpilot_solids2_trim150_scaffold_874_11
bacterium YEK0313, Bacteria

Not on your lists

7375..8142
DNA (768bp) protein (256aa)
idnO; gluconate 5-dehydrogenase oxidoreduct (EC:1.1.1.69); K00046 gluconate 5-dehydrogenase [EC:1.1.1.69] rbh
gluconate 5-dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003736667 rbh
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:CEJ11059.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_874_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8146..9201)
DNA (1056bp) protein (352aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0VDY3_RHILV rbh
Transcriptional regulator {ECO:0000313|EMBL:EJC71516.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
transcriptional regulator, LacI family; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor rbh
scnpilot_solids2_trim150_scaffold_874_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9319..10218
DNA (900bp) protein (300aa)
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] rbh
ribokinase n=1 Tax=Xanthobacteraceae RepID=UPI000372C6CB rbh
PfkB domain protein {ECO:0000313|EMBL:ADH90245.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_874_14
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10275..11552
DNA (1278bp) protein (426aa)
Putative transcriptional regulator, GntR family n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZL84_METPB rbh
GntR family transcriptional regulator rbh
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ACB78827.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_874_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11778..12227
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A517_STAND
Uncharacterized protein {ECO:0000313|EMBL:KFC69392.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_874_16
unknown

Not on your lists

12399..12650
DNA (252bp) protein (84aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_874_17
bacterium YEK0313, Bacteria

Not on your lists

comp(12751..14139)
DNA (1389bp) protein (463aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Xanthobacteraceae RepID=UPI00037A7B3F rbh
scnpilot_solids2_trim150_scaffold_874_18
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14323..14703
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031FA0CD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA20806.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_874_trna_1
unknown

Not on your lists

14830..14902
DNA (73bp)
transferRNA Ala
scnpilot_solids2_trim150_scaffold_874_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15197..16885)
DNA (1689bp) protein (563aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036B1EF5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42890.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative recombinase rbh
scnpilot_solids2_trim150_scaffold_874_20
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16878..17171)
DNA (294bp) protein (98aa)
UPI0003D6B520 related cluster n=1 Tax=unknown RepID=UPI0003D6B520
Uncharacterized protein {ECO:0000313|EMBL:KJS44333.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
scnpilot_solids2_trim150_scaffold_874_21
unknown

Not on your lists

17337..17561
DNA (225bp) protein (75aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_874_22
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17513..18274)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2I9W2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EXL08915.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_874_23
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18892..19788)
DNA (897bp) protein (299aa)
UPI0003D05340 related cluster n=1 Tax=unknown RepID=UPI0003D05340 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ESZ74004.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_874_24
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20059..20793
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7VTK5_PAETH
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AET56888.1}; TaxID=985665 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus terrae (strain HPL-003).;"
scnpilot_solids2_trim150_scaffold_874_25
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20771..21625
DNA (855bp) protein (285aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FMT2_9BURK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EDT01141.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_874_26
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21654..22256
DNA (603bp) protein (201aa)
UPI0003CEA738 related cluster n=1 Tax=unknown RepID=UPI0003CEA738
Myo-inositol 2-dehydrogenase {ECO:0000313|EMBL:ESY28538.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
hypothetical protein; K06988
scnpilot_solids2_trim150_scaffold_874_27
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22567..24027)
DNA (1461bp) protein (487aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
coenzyme A transferase domain-containing protein; K01026 propionate CoA-transferase [EC:2.8.3.1] rbh
Acetate CoA-transferase YdiF n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LQU4_BURGS rbh
Displaying 28 items

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