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scnpilot_solids2_trim150_scaffold_881

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_881_1
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..973
DNA (972bp) protein (324aa)
Integrating conjugative element relaxase n=3 Tax=Pseudomonas aeruginosa RepID=V8GP33_PSEAI
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component {ECO:0000313|EMBL:CDM23719.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_881_2
unknown

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970..1068
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_881_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1227..1412)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=V4PCP4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KIZ33151.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
scnpilot_solids2_trim150_scaffold_881_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1473..2783
DNA (1311bp) protein (437aa)
NrbE-like protein n=8 Tax=Pseudomonas aeruginosa RepID=S0IHC5_PSEAI rbh
nrbE-like protein rbh
Major facilitator transporter {ECO:0000313|EMBL:AKE69563.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
scnpilot_solids2_trim150_scaffold_881_5
Pseudomonas plecoglossicida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3049..3321
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WJ83_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AJG13762.1}; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_881_6
Pseudomonas plecoglossicida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3374..4363
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WFA1_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:AJG13761.1}; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
cation diffusion facilitator family transporter
scnpilot_solids2_trim150_scaffold_881_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4360..4740
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa U2504 RepID=U8ZJ85_PSEAI
Relaxase type IV secretory pathway VirD2 {ECO:0000313|EMBL:GAO21802.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_881_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4688..5086
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDT2_PSEAI
Penicillinase repressor {ECO:0000313|EMBL:AKE73397.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein; K07737 putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_881_9
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5086..6081
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WC74_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CEG52185.1}; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_881_10
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6268..7383
DNA (1116bp) protein (372aa)
RND family efflux transporter, MFP subunit n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK10_9BURK rbh
membrane-fusion protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_solids2_trim150_scaffold_881_11
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7385..10477
DNA (3093bp) protein (1031aa)
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK09_9BURK rbh
heavy metal efflux pump, cobalt-zinc-cadmium
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_solids2_trim150_scaffold_881_12
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10470..10772
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK08_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70980.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Protein of unknown function (DUF3240)
scnpilot_solids2_trim150_scaffold_881_13
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10769..12010
DNA (1242bp) protein (414aa)
Outer membrane protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK07_9BURK
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:EWS56605.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
outer membrane protein
scnpilot_solids2_trim150_scaffold_881_14
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12186..12923
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDV4_PSEAI
Membrane protein {ECO:0000313|EMBL:ETD48020.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_881_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12946..13584
DNA (639bp) protein (213aa)
Uncharacterized protein n=15 Tax=Pseudomonas aeruginosa RepID=U1FJ24_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETD48021.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_881_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13710..13970
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WJA2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETD48022.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
scnpilot_solids2_trim150_scaffold_881_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14194..15102
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=2 Tax=Proteobacteria RepID=Q13VS7_BURXL
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDM23710.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_881_18
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15079..15429)
DNA (351bp) protein (117aa)
Transcriptional regulator, XRE family n=2 Tax=Burkholderiaceae RepID=Q13VS6_BURXL
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABE31813.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
scnpilot_solids2_trim150_scaffold_881_19
unknown

Not on your lists

15446..15598
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_881_20
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15761..18994)
DNA (3234bp) protein (1078aa)
CzcA family heavy metal efflux pump n=1 Tax=Thauera aminoaromatica S2 RepID=N6Y0B9_9RHOO rbh
Heavy metal efflux pump, CzcA family protein {ECO:0000313|EMBL:KIN91974.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
CzcA family heavy metal efflux pump rbh
scnpilot_solids2_trim150_scaffold_881_21
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18996..20369)
DNA (1374bp) protein (458aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4K949_THASP rbh
RND family efflux transporter MFP subunit; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACR02560.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
scnpilot_solids2_trim150_scaffold_881_22
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20561..21835)
DNA (1275bp) protein (425aa)
Outer membrane efflux protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4K950_THASP rbh
outer membrane efflux protein rbh
Outer membrane efflux protein {ECO:0000313|EMBL:ACR02561.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
scnpilot_solids2_trim150_scaffold_881_23
unknown

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21913..22005
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_881_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22078..23502)
DNA (1425bp) protein (475aa)
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
Heavy metal sensor signal transduction histidine kinase n=3 Tax=Betaproteobacteria RepID=A9BPX9_DELAS rbh
scnpilot_solids2_trim150_scaffold_881_25
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23486..23902)
DNA (417bp) protein (139aa)
Transcriptional activator protein CopR n=2 Tax=Pseudomonas aeruginosa RepID=U9KTS9_PSEAI
DNA-binding heavy metal response regulator
Transcriptional activator protein CopR {ECO:0000313|EMBL:ETU96943.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
Displaying 25 items

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