ggKbase home page

scnpilot_solids2_trim150_scaffold_941

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_941_1
Thermus sp. 2.9, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(1..369)
DNA (369bp) protein (123aa)
ribose ABC transporter permease n=1 Tax=Thermus islandicus RepID=UPI0003B5FC3A
Ribose ABC transporter permease {ECO:0000313|EMBL:KHG65691.1}; TaxID=1577051 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. 2.9.;"
ABC-type transporter, integral membrane subunit; K10440 ribose transport system permease protein
scnpilot_solids2_trim150_scaffold_941_2
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(867..2069)
DNA (1203bp) protein (401aa)
Transposase mutator type n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQB2_9BACT
Transposase mutator type {ECO:0000313|EMBL:EHO39999.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
tnp; transposase for insertion sequence element IS256 in transposon Tn4001 rbh
scnpilot_solids2_trim150_scaffold_941_3
Deinococcus deserti, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

2360..3529
DNA (1170bp) protein (390aa)
Putative Tyrosine recombinase xerC-like protein n=1 Tax=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) RepID=C1CZ59_DEIDV
Tyrosine recombinase xerC-like protein
Putative Tyrosine recombinase xerC-like protein {ECO:0000313|EMBL:ACO45097.1}; TaxID=546414 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923).;"
scnpilot_solids2_trim150_scaffold_941_4
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

4249..5205
DNA (957bp) protein (319aa)
pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] rbh
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BH59_MEISD rbh
scnpilot_solids2_trim150_scaffold_941_5
unknown

Not on your lists

5469..5660
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_941_6
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(5876..6130)
DNA (255bp) protein (85aa)
copper-translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-translocating P-type ATPase n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CRA8_TRURR
Copper-translocating P-type ATPase {ECO:0000313|EMBL:ADI15196.1}; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
scnpilot_solids2_trim150_scaffold_941_7
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(6133..7104)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CSB9_TRURR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI13651.1}; Flags: Precursor;; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
scnpilot_solids2_trim150_scaffold_941_8
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(7101..7808)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CSC0_TRURR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI13652.1}; Flags: Precursor;; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
scnpilot_solids2_trim150_scaffold_941_9
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

8306..8578
DNA (273bp) protein (91aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NM89_MARHT
cytochrome c biogenesis protein transmembrane region
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:AEB11777.1}; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
scnpilot_solids2_trim150_scaffold_941_10
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

8731..8883
DNA (153bp) protein (51aa)
YHS domain protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHT5_THET1
YHS domain-containing protein
YHS domain protein {ECO:0000313|EMBL:ACZ43306.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
scnpilot_solids2_trim150_scaffold_941_11

Not on your lists

9007..9369
DNA (363bp) protein (121aa)
NADH-quinone oxidoreductase subunit n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T2Y7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN34753.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NADH-ubiquinone/plastoquinone oxidoreductase subunit 3
scnpilot_solids2_trim150_scaffold_941_12

Not on your lists

9366..11201
DNA (1836bp) protein (612aa)
Ni Fe-hydrogenase III large subunit-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZS0_RUBXD
Uncharacterized protein {ECO:0000313|EMBL:KKM90615.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Ni Fe-hydrogenase III large subunit-like protein
scnpilot_solids2_trim150_scaffold_941_13
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

11198..12097
DNA (900bp) protein (300aa)
Respiratory-chain NADH dehydrogenase, subunit 1 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZS1_RUBXD rbh
respiratory-chain NADH dehydrogenase subunit 1 rbh
Respiratory-chain NADH dehydrogenase, subunit 1 {ECO:0000313|EMBL:ABG03107.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
scnpilot_solids2_trim150_scaffold_941_14
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

12094..12597
DNA (504bp) protein (168aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZS2_RUBXD
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 {ECO:0000313|EMBL:ABG03106.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
scnpilot_solids2_trim150_scaffold_941_15
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

12594..12902
DNA (309bp) protein (103aa)
NADH-ubiquinone oxidoreductase subunit 4L; K05576 NAD(P)H-quinone oxidoreductase subunit 4L [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZS3_RUBXD
scnpilot_solids2_trim150_scaffold_941_16
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

12899..14815
DNA (1917bp) protein (639aa)
NADH dehydrogenase (quinone); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5] rbh
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ABG03104.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABG03104.1};; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
NADH dehydrogenase (Quinone) n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZS4_RUBXD rbh
scnpilot_solids2_trim150_scaffold_941_17
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

14846..16300
DNA (1455bp) protein (485aa)
proton-translocating NADH-quinone oxidoreductase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] rbh
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:ABG03103.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABG03103.1};; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZS5_RUBXD rbh
scnpilot_solids2_trim150_scaffold_941_18
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

16313..17698
DNA (1386bp) protein (462aa)
NADH dehydrogenase (quinone); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5] rbh
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZS6_RUBXD rbh
scnpilot_solids2_trim150_scaffold_941_19
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17849..18097)
DNA (249bp) protein (83aa)
Putative membrane protein (DUF2078) n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F8A0_DESDL
hypothetical protein
Putative membrane protein (DUF2078) {ECO:0000313|EMBL:AGA68886.1}; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
scnpilot_solids2_trim150_scaffold_941_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18097..20568)
DNA (2472bp) protein (824aa)
putative glycosidase (EC:3.2.1.-) rbh
Putative glycosidase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3X3_ANATU rbh
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
scnpilot_solids2_trim150_scaffold_941_21
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(20570..21556)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B350EA
Strain A contig00119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ53444.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
patatin; K07001 NTE family protein
scnpilot_solids2_trim150_scaffold_941_22
unknown

Not on your lists

comp(21557..22210)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B459F2
scnpilot_solids2_trim150_scaffold_941_23
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22517..22774
DNA (258bp) protein (86aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ABC-type polar amino acid transport system, ATPase component n=2 Tax=Saccharomonospora RepID=H8G963_9PSEU
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EHR61339.1}; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
scnpilot_solids2_trim150_scaffold_941_24
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

22802..22984
DNA (183bp) protein (61aa)
ectoine/hydroxyectoine ABC transporter ATP-binding protein (EC:3.6.3.28); K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003823069
Strain A contig00060, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ54094.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
scnpilot_solids2_trim150_scaffold_941_25
unknown

Not on your lists

comp(23059..23274)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_941_26
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23426..24049)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MKI2_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY48894.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
scnpilot_solids2_trim150_scaffold_941_27
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24130..24807)
DNA (678bp) protein (226aa)
nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:AEN72785.1}; EC=1.7.2.4 {ECO:0000313|EMBL:AEN72785.1};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Nitrous-oxide reductase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SK29_RHOMR
Displaying 27 items

View Taxonomy