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scnpilot_solids2_trim150_scaffold_956

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_956_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8..1477)
DNA (1470bp) protein (490aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WG29_9GAMM
scnpilot_solids2_trim150_scaffold_956_trna_1
unknown

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comp(18..91)
DNA (74bp)
transferRNA Gln
scnpilot_solids2_trim150_scaffold_956_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1575..2177)
DNA (603bp) protein (201aa)
Outer membrane lipoprotein LolB n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY7_9GAMM
outer membrane lipoprotein LolB
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_956_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2174..3931)
DNA (1758bp) protein (586aa)
Flp pilus assembly protein TadD n=1 Tax=Rhodanobacter denitrificans RepID=M4NK11_9GAMM
Flp pilus assembly protein TadD
Flp pilus assembly protein TadD {ECO:0000313|EMBL:AGG88111.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_956_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4049..5314
DNA (1266bp) protein (422aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glutamyl-tRNA reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKN5_9GAMM
scnpilot_solids2_trim150_scaffold_956_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5410..6489
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ22_9GAMM rbh
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
bacterial peptide chain release factor 1 (bRF-1)
scnpilot_solids2_trim150_scaffold_956_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6506..6772)
DNA (267bp) protein (89aa)
Acylphosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T3_9GAMM
Acylphosphatase {ECO:0000256|SAAS:SAAS00255930}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acylphosphatase
scnpilot_solids2_trim150_scaffold_956_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6772..7251)
DNA (480bp) protein (160aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhodanobacter denitrificans RepID=I4WG36_9GAMM
thiol-disulfide isomerase-like thioredoxin
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:AGG88106.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_956_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7248..8528)
DNA (1281bp) protein (427aa)
hypothetical protein (EC:3.1.-.-)
UPF0761 membrane protein rbn n=1 Tax=Rhodanobacter denitrificans RepID=I4WG37_9GAMM
UPF0761 membrane protein R2APBS1_0944 {ECO:0000256|HAMAP-Rule:MF_00672}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_956_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8644..9246
DNA (603bp) protein (201aa)
NAD(P)H quinone oxidoreductase n=1 Tax=Dyella japonica RepID=UPI00030D035B
NAD(P)H:quinone oxidoreductase, type IV
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_956_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9243..9590
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ17_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87208.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_956_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9587..10096
DNA (510bp) protein (170aa)
Single-strand DNA-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HET6_9BRAD
hypothetical protein
Single-strand DNA-binding protein {ECO:0000313|EMBL:ERF82986.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
scnpilot_solids2_trim150_scaffold_956_12
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(10156..11145)
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AR1_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ81855.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
scnpilot_solids2_trim150_scaffold_956_13
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11230..13458)
DNA (2229bp) protein (743aa)
Putative uncharacterized protein n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=D9XM11_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:GAF48108.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
thioredoxin domain-containing protein
scnpilot_solids2_trim150_scaffold_956_14
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13674..14054)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PBD3_9BURK
Glyoxalase {ECO:0000313|EMBL:KGM55578.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
glyoxalase family protein
scnpilot_solids2_trim150_scaffold_956_15
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14210..14680)
DNA (471bp) protein (157aa)
Diamine acetyltransferase n=1 Tax=Galbibacter marinus RepID=K2QH63_9FLAO
Diamine acetyltransferase {ECO:0000313|EMBL:EKF54087.1}; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
diamine acetyltransferase
scnpilot_solids2_trim150_scaffold_956_16
Shewanella pealeana, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14797..15858)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Vibrio cholerae 2740-80 RepID=A1F1T0_VIBCL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV86110.1}; TaxID=398579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella pealeana (strain ATCC 700345 / ANG-SQ1).;"
scnpilot_solids2_trim150_scaffold_956_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16060..16845)
DNA (786bp) protein (262aa)
Acyl-CoA thioesterase n=2 Tax=Rhodanobacter RepID=M4NBR7_9GAMM
acyl-CoA thioesterase
Acyl-CoA thioesterase {ECO:0000313|EMBL:AGG88100.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_956_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17118..17321
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSC5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90116.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_956_19
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(17637..18596)
DNA (960bp) protein (320aa)
homocysteine methyltransferase n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B31FDB rbh
homocysteine S-methyltransferase rbh
Homocysteine S-methyltransferase {ECO:0000313|EMBL:ACL45043.1}; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
scnpilot_solids2_trim150_scaffold_956_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19029..20669
DNA (1641bp) protein (547aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T9_9GAMM
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIL93780.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_956_21

Not on your lists

comp(20706..22808)
DNA (2103bp) protein (701aa)
Glycosyl hydrolase BNR repeat-containing protein (Fragment) n=1 Tax=uncultured bacterium RepID=I7EPH5_9BACT rbh
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:AFP20555.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
BNR repeat-containing glycosyl hydrolase
Displaying 22 items

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