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scnpilot_solids2_trim150_scaffold_983

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_983_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..739
DNA (738bp) protein (246aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJA3_9GAMM
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:EIL99544.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ATP-binding cassette protein, ChvD family
scnpilot_solids2_trim150_scaffold_983_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

853..1752
DNA (900bp) protein (300aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
orotidine 5''''-phosphate decarboxylase n=1 Tax=Rudaea cellulosilytica RepID=UPI000371BC1C rbh
orotidine 5''-phosphate decarboxylase, subfamily 2
scnpilot_solids2_trim150_scaffold_983_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1707..2243)
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptide deformylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZC5_9GAMM
peptide deformylase
scnpilot_solids2_trim150_scaffold_983_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2343..3152)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ83_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87274.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_983_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3320..5401
DNA (2082bp) protein (694aa)
Carbon starvation protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ82_9GAMM
Carbon starvation protein {ECO:0000313|EMBL:EIL87273.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
carbon starvation protein, predicted membrane protein
scnpilot_solids2_trim150_scaffold_983_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5398..5625
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003716AB0
Uncharacterized protein {ECO:0000313|EMBL:AIF49297.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
uncharacterized small protein
scnpilot_solids2_trim150_scaffold_983_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5983..9846
DNA (3864bp) protein (1288aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3) rbh
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodano
Phosphoribosylformylglycinamidine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZD8_9GAMM rbh
scnpilot_solids2_trim150_scaffold_983_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10034..10810
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBE3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_983_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10863..11783
DNA (921bp) protein (307aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNW8_9GAMM
Putative glycosyltransferase {ECO:0000313|EMBL:EIL88909.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative glycosyltransferase
scnpilot_solids2_trim150_scaffold_983_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11887..12825
DNA (939bp) protein (313aa)
Putative permease, DMT superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSK0_9GAMM
Putative permease, DMT superfamily protein {ECO:0000313|EMBL:EIL90191.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative permease, DMT superfamily
scnpilot_solids2_trim150_scaffold_983_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12835..13596)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4U9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94490.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
regulatory inactivation of DnaA Hda protein
scnpilot_solids2_trim150_scaffold_983_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13593..14786)
DNA (1194bp) protein (398aa)
Putative permease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKM5_9GAMM
Putative permease {ECO:0000313|EMBL:EIL87766.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative permease
scnpilot_solids2_trim150_scaffold_983_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14931..15914)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQY8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90194.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_983_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..17104
DNA (1053bp) protein (351aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4U6_9GAMM
scnpilot_solids2_trim150_scaffold_983_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17108..17791
DNA (684bp) protein (228aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylformylglycinamidine synthase, clade II n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ0_9GAMM
scnpilot_solids2_trim150_scaffold_983_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17841..18545
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ1_9GAMM
Protein of unknown function (DUF3108)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_983_17
Xanthomonas gardneri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18582..18881)
DNA (300bp) protein (100aa)
Plasmid stabilization system protein n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0C4L9_9XANT
Plasmid stabilization system protein {ECO:0000313|EMBL:EGD19536.1}; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas gardneri ATCC 19865.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_983_18
Xanthomonas gardneri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18883..19167)
DNA (285bp) protein (95aa)
CopG family transcriptional regulator n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A8C8C2
Ribbon-helix-helix protein, copG family {ECO:0000313|EMBL:EGD19537.1}; Flags: Precursor;; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas gardneri ATCC 19865.;"
Ribbon-helix-helix protein, copG family
scnpilot_solids2_trim150_scaffold_983_19
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19397..19603)
DNA (207bp) protein (69aa)
type I restriction-modification system, M subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Type I restriction-modification system, M subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AUQ5_SYNWW
N-6 DNA methylase {ECO:0000313|EMBL:KFO66356.1}; TaxID=1499107 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SCADC.;"
scnpilot_solids2_trim150_scaffold_983_20
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(19638..20015)
DNA (378bp) protein (126aa)
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
scnpilot_solids2_trim150_scaffold_983_21
unknown

Not on your lists

comp(20012..20302)
DNA (291bp) protein (97aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_983_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20377..21636)
DNA (1260bp) protein (420aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE6_9GAMM
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
scnpilot_solids2_trim150_scaffold_983_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21674..21964)
DNA (291bp) protein (97aa)
BolA superfamily transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ7_9GAMM
putative transcriptional regulator, BolA superfamily
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 23 items

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