ggKbase home page

scnpilot_solids2_trim150_scaffold_96_102

Organism: SCNPILOT_SOLID2_TRIM150_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 16
Location: comp(123329..126937)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 999.99
  • Bit_score: 1901
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM92_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 79.0
  • Coverage: 999.99
  • Bit_score: 1901
  • Evalue 0.0
transcription-repair coupling factor Mfd similarity KEGG
DB: KEGG
  • Identity: 76.4
  • Coverage: 999.99
  • Bit_score: 1790
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3609
ATGCCTGCCCGAATCCCGCCGCCCGCCCTGCCCACCACCCCCAAGCAACGCCGGTACTGGACCCCGCCCTGCGGTTCGGCGCGGGCGCTGGTGATCGCCGAGGCGGCGCGTGCGCACTCCGGCCTGCTGGTGGCGGTCACCCGTGACAACCTGCGCGCGCGGGCGCTCGAAGCCGAGCTGGAAATATTCGCCAACGACCTGCCGGTGCTGCACTTCCCGGACTGGGAAACCCTGCCCTACGAGGTCTTCAGCCCGCACCCGGCGGTAGTCTCGCAACGCATTGCCACGCTGTACCGCCTGCCCGGCCTGACGCGCGGCATGCTGGTGGTGCCGATGGCCACACTGATGCAGCGCATCGCGCCGCGCAGCCACATTGCCGGCACCGGCCTGATGCTCGACCGCGGGCAGAAATTCGATCTTGCCGAGGAACAGCGACGCATGCAGGCCGCCGGTTACCGCCACGTGCCGCAGGTTGGCGAGCCCGGTGAATTCGCCGTGCGCGGCGCGCTGGTGGACATCTACCCCATGGGTGCCACCGAACCCTACCGGGTCGAGCTGCTGGACGACGAGATCGACTCGATCCGCTGCTTCGACCCGGAGACGCAGCGCTCGCAGCAGCAGGTGGACAGCGTGCAGTTGCTGCCGGCACGCGAATTCCCGACCACCGAGGAAGCCGCCAAGGCGTTCCGCAGCCGGCTGCGCGAGCGTTTCCCCATCGATCCGCGGCACTGCCCGCTGTACCAGGACATGAAGGCCGGCGTCACCCCGGGCGGCATCGAGTACTACCTGCCGTTGTTCTTCCTGGCGGAGGCTCCGCCCACGGACGCGCGGACCGGTACGCAGGATCCGCGTGCAGGCACCGCCACACTGTTCGACTACCTCGCCGACGACGCGCTGTTCGTGCTGTGCGAGGGTGCCAGCGAAGCCGCCGAACAGTTCTGGACACAAACCGGCGAGCGCTACGAGCAGCGCGCGCACGACATCGAACGTCCGGTGCTGCCGCCGACGGAAATCTTCCTGCCCCCGGATACATTGCGCGCGCAACTGAACCGGCGCCTGCGCGTCGAGGTGGTGGATGCCGGCCACGAACACGCGATCGACACCGGCAGCCGGCCAGCGCCGGAGCTGGCGCTCAATCGCAAGGGCGAGGAACCGGGCACGGCGCTGCGCCAGTTCCTGTCCAGTTACCCCGGCCGCGTACTGATCGCCGCCGACTCCGCCGGCCGCCGCGAAGCCCTGCTCGAATCCCTGGCCGCAGCGGACCTGCGTCCCGCCCCCGTCGACGGCTGGCAAGCCTTCCTCGACCCGGCGGAAGTCCATGCTTCTCCCCCTGCACCATCGGTACCTGCTCCCTCTCCCCTGGCTCCGCCGGGGGAGAGGGCTGGGGTGAGGGGGGCTCTTGCCGTAGAAGCCCCCCGCTTCGCCATCACTGTCGCCCCCCTCGAGCAAGGCTTTGCCCTGCACAAGCCAGCGCTCACCGTACTCACCGAGCGCGAGCTCTACGGCGAGCGCGTGCGCAGCGAGCGCGAGCGCCGACGCCGTCGCGGCGACGTACGCGACCCCGAAAGCATCATCCGTGACCTGACCGAGCTCACCATCGGCGCGCCCATCGTGCACGTCGACCACGGCGTCGGCCGCTACCAGGGCCTGGTCTCGATGGACGTCGGCGGTATGGCTGGCGAATTCCTGGCCATCGAATACGCCAAGGGCGACAAGCTCTACGTGCCGGTCTCGCAGCTTGGCCTGGTCAGCCGCTACAGCGGCACCAGCCCCGAGCTGGCGCCGCTGCATTCGCTGGGCGGCGACGCCTGGGAGCGGGCGCGGCGCAAGGCGGCGGAGAAAGTTCGCGACGTCGCCGCCGAACTGCTCGCCATCTATGCCCAGCGCGAAGCACGCGGCGGCGAAGCCCTGCTCATCGACCGTCCGCTGGTGGAGGCGTTCGGGCGCAGCTTCCCGTTCGAGGAAACCCCCGACCAGGAATCGGCGATCGAGGCTGTGCTGGCCGACCTGGCCGCGCCGCGCGCCATGGACCGCGTGGTCTGCGGCGACGTCGGCTTCGGCAAGACCGAAGTCGCGCTGCGTGCGGCGTTTGCGGCCACCACCGCCGGCCGCCAGGTCGCCGTGCTGGTGCCGACCACGCTCCTGGCCCAGCAGCACTACAGCAACTTTGCCGACCGCTTCGCCGACTGGCCGGTGCGCGTGGACATGCTCTCGCGCTTCCGTTCGAAGAAGGAAGTCGGCGAGACGCTCAAGCGGCTGGCGGCCGGCGAGATCGACGTCATCGTCGGCACGCACAAGCTGCTCATGCCCGAGATCAAGTTCCAGCGCCTCGGCCTGGTGATCGTGGACGAAGAACAGCGCTTCGGCGTGCGCCAGAAGGAGCAGCTGAAAAAGCTGCGCGCCGAGGTGGATCTCCTCACCCTCACCGCCACGCCGATCCCCCGCACGCTGAACATGGCCATGAGCGGGCTGCGCGACCTGTCGCTGATCGCCACGCCGCCGGCGCACCGCACCGCGGTGCGCACCTTCATCTCGCCCTGGGACCAGGCCACGATCCGCGAGGCCTTGCAGCGCGAGCTGAGCCGCGGCGGCCAGGTGTTTTTCCTGCACAACGAGGTCAGCACGATTGCCCGCACGGCACGCGACGTGGAGACCCTGGTGCCCGAGGCGCGCGTGCGCATCGCACACGGCCAAATGCCGGAGCGCGAGCTGGAAGGCATCATGGCCGACTTCCATCGCCAGCGCTTCAACATCCTGGTGTGCACCACGATCATCGAGACCGGCATCGACATCCCCACCGCCAACACCATCATCATCGACCGCGCCGACCACTTCGGCCTGGCCCAGCTGCACCAGTTGCGCGGCCGCGTCGGCCGCTCCAGCCAGCGCGCGTTTGCCTACCTGATCGTGCCCGAGCGCAACGCCATCACCGCCGATGCGCGCAAGCGGCTGGAAGCGCTGGCCTCGCTGGAAGAACTCGGCGCCGGCTTCACCCTGGCCACCCACGACCTGGAGATCCGCGGCGCCGGCGAGCTGCTGGGCGACGAGCAATCTGGGCAGATCCAGTCCGTCGGCTTCGGCCTGTACAGCGAGCTGCTGGACCGCGCTGTGCGCGCGCTCAAGTCCGGCCAGGTGCCCGATTTCGATCTCGCCTCAGACCATGAGACCGAAGTCGAACTGCACCTGCCGGCGCTCATCCCCGAGGATTACCTGGGCGACGTGCACACCCGGCTGACCCTGTACAAGCGCATTGCCAGCGCCGCGGACGAGGAGGTGTTGCGCGACCTGCAGGTGGAGATGATCGACCGCTTCGGCCTGCTGCCCGAGCCGGCCAAGCAACTCTTCGCGGTCACCAGCCTGAAGCTGGTGGCCACGCCACTCGGCATCCGCAAGCTGGACCTCGGCCAGAACGGCGGACGCATCACCTTCCGCGACAAGCCCAACGTCGACCCGCGCCGCATCATCGAGCTGATCCAGCGCTCGCCGCGCGTCTACCAGCTGGCCGGGCAGGACAAGCTGCGCATCATCCAGGAGCTGCCCGATGCGGCGACGCGCCTGCAGGCGGCCAAGAACATCCTGCTGCTGCTCGGTGCGCGCACGCCCCAATGA
PROTEIN sequence
Length: 1203
MPARIPPPALPTTPKQRRYWTPPCGSARALVIAEAARAHSGLLVAVTRDNLRARALEAELEIFANDLPVLHFPDWETLPYEVFSPHPAVVSQRIATLYRLPGLTRGMLVVPMATLMQRIAPRSHIAGTGLMLDRGQKFDLAEEQRRMQAAGYRHVPQVGEPGEFAVRGALVDIYPMGATEPYRVELLDDEIDSIRCFDPETQRSQQQVDSVQLLPAREFPTTEEAAKAFRSRLRERFPIDPRHCPLYQDMKAGVTPGGIEYYLPLFFLAEAPPTDARTGTQDPRAGTATLFDYLADDALFVLCEGASEAAEQFWTQTGERYEQRAHDIERPVLPPTEIFLPPDTLRAQLNRRLRVEVVDAGHEHAIDTGSRPAPELALNRKGEEPGTALRQFLSSYPGRVLIAADSAGRREALLESLAAADLRPAPVDGWQAFLDPAEVHASPPAPSVPAPSPLAPPGERAGVRGALAVEAPRFAITVAPLEQGFALHKPALTVLTERELYGERVRSERERRRRRGDVRDPESIIRDLTELTIGAPIVHVDHGVGRYQGLVSMDVGGMAGEFLAIEYAKGDKLYVPVSQLGLVSRYSGTSPELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQREARGGEALLIDRPLVEAFGRSFPFEETPDQESAIEAVLADLAAPRAMDRVVCGDVGFGKTEVALRAAFAATTAGRQVAVLVPTTLLAQQHYSNFADRFADWPVRVDMLSRFRSKKEVGETLKRLAAGEIDVIVGTHKLLMPEIKFQRLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTLTATPIPRTLNMAMSGLRDLSLIATPPAHRTAVRTFISPWDQATIREALQRELSRGGQVFFLHNEVSTIARTARDVETLVPEARVRIAHGQMPERELEGIMADFHRQRFNILVCTTIIETGIDIPTANTIIIDRADHFGLAQLHQLRGRVGRSSQRAFAYLIVPERNAITADARKRLEALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQSVGFGLYSELLDRAVRALKSGQVPDFDLASDHETEVELHLPALIPEDYLGDVHTRLTLYKRIASAADEEVLRDLQVEMIDRFGLLPEPAKQLFAVTSLKLVATPLGIRKLDLGQNGGRITFRDKPNVDPRRIIELIQRSPRVYQLAGQDKLRIIQELPDAATRLQAAKNILLLLGARTPQ*