ggKbase home page

scnpilot_solids2_trim150_scaffold_96

Search features with annotation key words

Displaying items 1-30 of 244 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_96_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(194..508)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003491764
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_96_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(611..844)
DNA (234bp) protein (78aa)
TIGR02449 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ8_9GAMM
TIGR02449 family protein
TIGR02449 family protein {ECO:0000313|EMBL:AGG90438.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_96_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

974..1567
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1A1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93242.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein; K09895 hypothetical protein
scnpilot_solids2_trim150_scaffold_96_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1525..2874
DNA (1350bp) protein (450aa)
aminopeptidase P (EC:3.4.11.9)
Aminopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1T9_9GAMM
Aminopeptidase {ECO:0000313|EMBL:EIL93430.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_96_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2977..4362
DNA (1386bp) protein (462aa)
cytochrome bd ubiquinol oxidase, subunitIprotein; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-] rbh
Cytochrome bd ubiquinol oxidase, subunitIprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRL5_9GAMM rbh
Cytochrome bd ubiquinol oxidase, subunitIprotein {ECO:0000313|EMBL:EIL89856.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_96_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4359..5369
DNA (1011bp) protein (337aa)
cytochrome bd ubiquinol oxidase, subunit II protein; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome bd ubiquinol oxidase, subunit II protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRL4_9GAMM
Cytochrome bd ubiquinol oxidase, subunit II protein {ECO:0000313|EMBL:EIL89855.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_96_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5415..5777)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93619.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PilZ domain-containing protein
scnpilot_solids2_trim150_scaffold_96_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5774..8059)
DNA (2286bp) protein (762aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHQ1_9GAMM
Protein of unknown function (DUF1631)
Uncharacterized protein {ECO:0000313|EMBL:AGG90429.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_96_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8144..9310)
DNA (1167bp) protein (389aa)
HemN family oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C3_9GAMM
HemN family oxidoreductase {ECO:0000313|EMBL:EIL93614.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative oxygen-independent coproporphyrinogen III oxidase
scnpilot_solids2_trim150_scaffold_96_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9321..9911)
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
nucleoside-triphosphate diphosphatase n=1 Tax=Dyella ginsengisoli RepID=UPI000345F11F
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
scnpilot_solids2_trim150_scaffold_96_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9919..10653)
DNA (735bp) protein (245aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
RNAse PH (EC:2.7.7.56) rbh
Ribonuclease PH n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRK7_9GAMM rbh
scnpilot_solids2_trim150_scaffold_96_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10740..11585
DNA (846bp) protein (282aa)
TIGR00255 family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHK2_9GAMM
TIGR00255 family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_96_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11582..12232
DNA (651bp) protein (217aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2B9_9GAMM
scnpilot_solids2_trim150_scaffold_96_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12314..13150
DNA (837bp) protein (279aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI3_9GAMM
ABC-type transport system involved in resistance to organic solvents, ATPase component {ECO:0000313|EMBL:EIM01025.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type transport system involved in resistance to organic solvents, ATPase component
scnpilot_solids2_trim150_scaffold_96_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13147..13923
DNA (777bp) protein (259aa)
Conserved hypothetical integral membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY2_9GAMM
hypothetical protein
Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AGG90422.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_96_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13945..14859
DNA (915bp) protein (305aa)
ABC-type transport system involved in resistance to organic solvents, periplasmic component n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY1_9GAMM
ABC-type transport system involved in resistance to organic solvents, periplasmic component
ABC-type transport system involved in resistance to organic solvents, periplasmic component {ECO:0000313|EMBL:AGG90421.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_96_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14899..15579
DNA (681bp) protein (227aa)
Organic solvent resistance ABC transporter auxiliary protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRK1_9GAMM
Organic solvent resistance ABC transporter auxiliary protein {ECO:0000313|EMBL:EIL89842.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC-type transport system involved in resistance to organic solvents, auxiliary component
scnpilot_solids2_trim150_scaffold_96_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15576..15893
DNA (318bp) protein (106aa)
Putative NTP binding protein (Contains STAS domain) n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX9_9GAMM
putative NTP binding protein (contains STAS domain)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_96_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15912..16280)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXN0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91971.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_96_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16291..17364)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346F8DE
VirB6 protein {ECO:0000313|EMBL:EIL91967.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB6; VirB6 protein; K03201 type IV secretion system protein VirB6 rbh
scnpilot_solids2_trim150_scaffold_96_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17423..18199)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91966.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_96_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18214..20691)
DNA (2478bp) protein (826aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344928B
Type IV secretion/conjugal transfer ATPase {ECO:0000313|EMBL:EIL91965.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type IV secretion/conjugal transfer ATPase; K03199 type IV secretion system protein VirB4
scnpilot_solids2_trim150_scaffold_96_23
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(20740..21048)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346EAD1
Uncharacterized protein {ECO:0000313|EMBL:KIJ72227.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
type IV secretory pathway VirB3 family protein; K03198 type IV secretion system protein VirB3
scnpilot_solids2_trim150_scaffold_96_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21041..21451)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034780F2
Putative type IV secretion system protein {ECO:0000313|EMBL:EIL91963.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_solids2_trim150_scaffold_96_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21591..22466)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034AFD55
Putative type IV secretion system conjugal protein {ECO:0000313|EMBL:EIL91962.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
VirB1 protein; K03194 type IV secretion system protein VirB1
scnpilot_solids2_trim150_scaffold_96_26
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22445..23536)
DNA (1092bp) protein (364aa)
VirB11 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM0_9GAMM
Type IV secretion system energizing component VirB11 {ECO:0000313|EMBL:KJV26028.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
VirB11 protein; K03196 type IV secretion system protein VirB11
scnpilot_solids2_trim150_scaffold_96_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23560..24765)
DNA (1206bp) protein (402aa)
VirB10 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL9_9GAMM
VirB10 protein {ECO:0000313|EMBL:EIL91960.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB10; type IV secretion system channel component VirB4; K03195 type IV secretion system protein VirB10
scnpilot_solids2_trim150_scaffold_96_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24762..25529)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344F3C5
Type IV secretion system protein Virb9 {ECO:0000313|EMBL:EIL91959.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB9; VirB9 protein; K03204 type IV secretion system protein VirB9
scnpilot_solids2_trim150_scaffold_96_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25526..26428)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003459D21
VirB8 protein {ECO:0000313|EMBL:EIL91958.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative putative conjugative transfer protein; K03203 type IV secretion system protein VirB8
scnpilot_solids2_trim150_scaffold_96_30
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26451..26921)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91957.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
Displaying items 1-30 of 244 in total

View Taxonomy