ggKbase home page

scnpilot_solids2_trim150_scaffold_2346_4

Organism: SCNPILOT_SOLID2_TRIM150_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 16
Location: 1661..1927

Top 3 Functional Annotations

Value Algorithm Source
Conjugal transfer transmembrane protein TrbD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP28_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 94.4
  • Coverage: 89.0
  • Bit_score: 171
  • Evalue 2.80e-40
Conjugal transfer transmembrane protein TrbD {ECO:0000313|EMBL:EIM01220.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.4
  • Coverage: 89.0
  • Bit_score: 171
  • Evalue 4.00e-40
trbD; conjugal transfer transmembrane protein TrbD; K03198 type IV secretion system protein VirB3 similarity KEGG
DB: KEGG
  • Identity: 88.4
  • Coverage: 86.0
  • Bit_score: 166
  • Evalue 4.90e-39

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 267
ATGAACGAGTCCACCGCCACCGGCTTCGAGGTGCCGCTGCATCGGTCGCTGACCGAACCGATCCTGATGGGCGGTGCGCCGCGCACCGTGGCTATCGCCAACGGCACGCTGGCCGCCGCCGTGGGGCTGGGGCTGCAACTGTGGGTTCCTGGCATCGCGCTATGGCTGATCGGCCATTCGCTCGCCGTGTGGGGCGCGCGCGTCGATCCGCAGTTCATGTCCGTCTTCGCGCGGCACCTGAAGCATCGACCGCTGCTGGACGTGTGA
PROTEIN sequence
Length: 89
MNESTATGFEVPLHRSLTEPILMGGAPRTVAIANGTLAAAVGLGLQLWVPGIALWLIGHSLAVWGARVDPQFMSVFARHLKHRPLLDV*