ggKbase home page

scnpilot_solids2_trim150_scaffold_1434_7

Organism: SCNPILOT_SOLID2_TRIM150_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 16
Location: 6552..7151

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDI6_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 48.4
  • Coverage: 192.0
  • Bit_score: 189
  • Evalue 3.90e-45
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 48.4
  • Coverage: 192.0
  • Bit_score: 189
  • Evalue 1.20e-45
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW00436.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.4
  • Coverage: 192.0
  • Bit_score: 189
  • Evalue 5.40e-45

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 600
ATGAACCCAATACTTCCCAATGAATTGGAATTACTCAGGCAACTAATTGCAGGAGATGCCGGATCATTCAGGAAAATATACGAGTATTACCAGGGAAAGATTTTTGTGTTTGCGTTACGGTTAACCAAATCAAAATCAGATGCAGAAGAAGTAGTACAGGAAGTTTTTGTAAAGCTTTGGGAAAAAAGAGAAAAGATAAAGGTTGAAAAAAATTTCAATGCCTATATTCTTACCATTACGAAAAACCTGGTTCTTGACAGGTTAAAAAAGGCTGCATACGATAAAACTATTCAGCAGAATATCTATCAGAATATGCAGGCATTGCAAAACGCTACAGTAGATATTTTGATTGAGAAAGAACTGACCAGGCTTCATCAACAGGCAGTTGACAGGCTTTCTCCGCAAAAGAAAATTATTTTCAGGCTGAGCCGCGAAGAAGAGCTTAGCTATGAAGAGATAGCTGCAAAGCTTGGAATTTCTAAAAATACCGTACGCAATCAAATGGCTGATTCACTGAAATCCATCAGGGAATACATTGCCGGCCATCCGGACATTGCTCTTATGTTATTAGCAACCATATACGTTGATCAACTTCTTTAA
PROTEIN sequence
Length: 200
MNPILPNELELLRQLIAGDAGSFRKIYEYYQGKIFVFALRLTKSKSDAEEVVQEVFVKLWEKREKIKVEKNFNAYILTITKNLVLDRLKKAAYDKTIQQNIYQNMQALQNATVDILIEKELTRLHQQAVDRLSPQKKIIFRLSREEELSYEEIAAKLGISKNTVRNQMADSLKSIREYIAGHPDIALMLLATIYVDQLL*