ggKbase home page

scnpilot_solids2_trim150_scaffold_802_20

Organism: SCNPILOT_SOLID2_TRIM150_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 16
Location: 22435..23019

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-E factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDI9_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 94.3
  • Coverage: 194.0
  • Bit_score: 378
  • Evalue 3.30e-102
  • rbh
RNA polymerase sigma-E factor {ECO:0000313|EMBL:EIL97530.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.3
  • Coverage: 194.0
  • Bit_score: 378
  • Evalue 4.70e-102
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 78.4
  • Coverage: 194.0
  • Bit_score: 315
  • Evalue 1.10e-83

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGCACGACGACGATCTCGACTCCGACGTCACCGACCGCCTGCTGCTGCAGCGCATGGCGAACGGTGATCGTGCCGCCCTGGGCATCCTGTACCGCAGCTACCACGGCCGGCTGTGCCGCTTCCTGGGCCGCCTGACCCGCCGCCCCGAGGTCATCGAGGAAGTCATCAACGACTGCTTCTGGATCGCCTGGCAGAAGGCCGGCAGCTTCCACGGCGACTCGCGCGTCTCCACCTGGCTGATGGGCATCGCCTACCGCAGCGGGCTGAAGACCCTGCGCCAGCATGGCGACGCCCCGGTCGAGGACGATCCCCGGCGCGAGGAGCGCAGCGCCGCCCACGACCTGGACGAGGACCGCGAACTGCGCGACTGGCTGAGCAAGGGGCTCGACCGCCTGTCGGCGGACCAGCGCGTGGTGATCGAGCTGGTCTACGGCGTGGGGCACAGCCTGGACGAGGTGGCCGTGATCATGCAGTGTCCGGTGGGCACGGTGAAGGCGCGCCTGTTCCATGCGCGGGTCAAGCTGCGCAACGTGTTGCCGGGTCTGGCCGGCGAGCCGCCCCAACGCACCGAGGCCATGCCATGA
PROTEIN sequence
Length: 195
MHDDDLDSDVTDRLLLQRMANGDRAALGILYRSYHGRLCRFLGRLTRRPEVIEEVINDCFWIAWQKAGSFHGDSRVSTWLMGIAYRSGLKTLRQHGDAPVEDDPRREERSAAHDLDEDRELRDWLSKGLDRLSADQRVVIELVYGVGHSLDEVAVIMQCPVGTVKARLFHARVKLRNVLPGLAGEPPQRTEAMP*