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scnpilot_solids2_trim150_scaffold_22

Search features with annotation key words

Displaying items 1-30 of 404 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_22_1
unknown

Not on your lists

comp(2..73)
DNA (72bp) protein (24aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_22_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(315..1049)
DNA (735bp) protein (245aa)
GntR family transcriptional regulator n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WYP7_9BURK rbh
Predicted D-glucarate or D-galactorate regulator, GntR family {ECO:0000313|EMBL:CDM23252.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
gntR; GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_22_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1120..2394)
DNA (1275bp) protein (425aa)
Glucarate dehydratase {ECO:0000313|EMBL:CDM23249.1}; EC=4.2.1.40 {ECO:0000313|EMBL:CDM23249.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
glucarate dehydratase (EC:4.2.1.40); K01706 glucarate dehydratase [EC:4.2.1.40] rbh
Mandelate racemase/muconate lactonizing protein n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WVG9_9BURK rbh
scnpilot_solids2_trim150_scaffold_22_4
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2666..3865
DNA (1200bp) protein (400aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Halomonas sp. HAL1 RepID=G4F9E0_9GAMM
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:KJK16196.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
mandelate racemase/muconate lactonizing protein
scnpilot_solids2_trim150_scaffold_22_5
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3939..4916
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2IQX9_9PSED rbh
tctC2; protein TctC rbh
Tax=CG_Rhodof_04
scnpilot_solids2_trim150_scaffold_22_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5036..5515
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Pseudomonas sp. S9 RepID=UPI0002557451
Uncharacterized protein {ECO:0000313|EMBL:KJH79897.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_22_7
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5526..7016
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2IXP0_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:ENA29825.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HPB0071.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_22_8
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7093..8286)
DNA (1194bp) protein (398aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KL98_9RHIZ rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EMG55619.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
mandelate racemase/muconate lactonizing protein
scnpilot_solids2_trim150_scaffold_22_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8315..8806)
DNA (492bp) protein (164aa)
ABC transporter, periplasmic substrate-binding protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X489_OCHA4
ABC transporter, periplasmic substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:ABS16043.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
scnpilot_solids2_trim150_scaffold_22_10
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8846..9757)
DNA (912bp) protein (304aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
Dihydrodipicolinate synthase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XLJ1_9RHIZ rbh
Dihydrodipicolinate synthase {ECO:0000313|EMBL:ERI15760.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
scnpilot_solids2_trim150_scaffold_22_11
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9754..10494)
DNA (741bp) protein (247aa)
Transcriptional regulator, GntR family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X487_OCHA4
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:EEQ93275.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
scnpilot_solids2_trim150_scaffold_22_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10863..12035
DNA (1173bp) protein (391aa)
ABC transporter substrate-binding protein n=2 Tax=Pandoraea RepID=V5UBW7_9BURK rbh
ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:CDM23248.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_22_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12110..13189
DNA (1080bp) protein (360aa)
spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00030F24ED rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:CDM23247.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter rbh
scnpilot_solids2_trim150_scaffold_22_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13186..14061
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Burkholderia bryophila RepID=UPI000376940B rbh
ABC transporter permease protein {ECO:0000313|EMBL:CDM23246.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
binding-protein-dependent transport system inner membrane protein rbh
scnpilot_solids2_trim150_scaffold_22_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14067..14933
DNA (867bp) protein (289aa)
ABC transporter permease n=1 Tax=Pandoraea sp. RB-44 RepID=V5UCP3_9BURK rbh
ABC transporter, permease protein {ECO:0000313|EMBL:CDM23245.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_22_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14949..15842
DNA (894bp) protein (298aa)
Aldose 1-epimerase family protein n=1 Tax=Burkholderia sp. RPE64 RepID=R4WL97_9BURK
Aldose epimerase family protein {ECO:0000313|EMBL:CDM23244.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
aldose 1-epimerase family protein
scnpilot_solids2_trim150_scaffold_22_17
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15974..17164)
DNA (1191bp) protein (397aa)
mandelate racemase/muconate lactonizing protein (EC:4.2.1.42) rbh
MdlA n=1 Tax=Pseudomonas taiwanensis SJ9 RepID=V7D5T2_9PSED rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:KJK16196.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
scnpilot_solids2_trim150_scaffold_22_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17397..18965
DNA (1569bp) protein (523aa)
Ketoglutarate semialdehyde dehydrogenase {ECO:0000313|EMBL:CDM23243.1}; EC=1.2.1.26 {ECO:0000313|EMBL:CDM23243.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
aldehyde dehydrogenase; K14519 NADP-dependent aldehyde dehydrogenase [EC:1.2.1.4] rbh
Aldehyde Dehydrogenase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBL3_BEII9 rbh
scnpilot_solids2_trim150_scaffold_22_19
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18969..20318
DNA (1350bp) protein (450aa)
Glucarate dehydratase {ECO:0000313|EMBL:ELS24585.1}; EC=4.2.1.40 {ECO:0000313|EMBL:ELS24585.1};; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
gudD; glucarate dehydratase (EC:4.2.1.40)
Glucarate dehydratase n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MDL6_PSEPS
scnpilot_solids2_trim150_scaffold_22_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20401..21300
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6Z2V5_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:CDM22613.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
putative permease; K15270 S-adenosylmethionine uptake transporter
scnpilot_solids2_trim150_scaffold_22_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21320..23845)
DNA (2526bp) protein (842aa)
UPF0753 protein IMCC9480_1736 n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W4B8_9BURK
UPF0753 protein BN940_03841 {ECO:0000256|HAMAP-Rule:MF_01871}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K09822 hypothetical protein
scnpilot_solids2_trim150_scaffold_22_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23842..25443)
DNA (1602bp) protein (534aa)
NADH dehydrogenase subunit L; K05577 NAD(P)H-quinone oxidoreductase subunit 5 [EC:1.6.5.3] rbh
NADH dehydrogenase subunit L n=1 Tax=Burkholderia glumae RepID=UPI000303AC2C rbh
NADH dehydrogenase, subunit 5 {ECO:0000313|EMBL:CDM23241.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids2_trim150_scaffold_22_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25539..26507
DNA (969bp) protein (323aa)
Transcriptional regulator, LysR family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQW9_RUBGI rbh
Hydrogen peroxide-inducible genes activator {ECO:0000313|EMBL:CDM23240.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA rbh
scnpilot_solids2_trim150_scaffold_22_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26489..27124
DNA (636bp) protein (212aa)
Carbonic anhydrase {ECO:0000313|EMBL:CDM23239.1}; EC=4.2.1.1 {ECO:0000313|EMBL:CDM23239.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Carbonate dehydratase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QXJ2_9BURK rbh
carbonic anhydrase rbh
scnpilot_solids2_trim150_scaffold_22_25
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27177..27758)
DNA (582bp) protein (194aa)
Uncharacterized protein n=5 Tax=Bordetella RepID=K0MW98_BORBM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAE37112.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
scnpilot_solids2_trim150_scaffold_22_26
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27769..29976)
DNA (2208bp) protein (736aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=3 Tax=Ralstonia RepID=B2UEU8_RALPJ rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM23234.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase rbh
scnpilot_solids2_trim150_scaffold_22_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30222..30710
DNA (489bp) protein (163aa)
GAF domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHZ0_9GAMM
Free methionine-(R)-sulfoxide reductase {ECO:0000313|EMBL:CDM23230.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
GAF domain-containing protein
scnpilot_solids2_trim150_scaffold_22_28
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30727..31812)
DNA (1086bp) protein (362aa)
Tartrate dehydrogenase n=1 Tax=Thauera sp. 63 RepID=N6XD55_9RHOO rbh
Tartrate dehydrogenase {ECO:0000313|EMBL:ENO79696.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
tartrate dehydrogenase rbh
scnpilot_solids2_trim150_scaffold_22_29
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31848..32852)
DNA (1005bp) protein (335aa)
Asparaginase n=1 Tax=Thauera sp. 63 RepID=N6YBB2_9RHOO rbh
Asparaginase {ECO:0000313|EMBL:ENO79697.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
ansA; L-asparaginase
scnpilot_solids2_trim150_scaffold_22_30
bacterium YEK0313, Bacteria

Not on your lists

comp(32852..33619)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000318F090 rbh
Uncharacterized protein {ECO:0000313|EMBL:CEJ13098.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein rbh
Displaying items 1-30 of 404 in total

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