ggKbase home page

scnpilot_solids2_trim150_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 267 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_28_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57..590)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EL24_9BURK
Transposon {ECO:0000313|EMBL:GAO26428.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_28_2
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(587..859)
DNA (273bp) protein (91aa)
ParB partition protein n=8 Tax=Pseudomonas aeruginosa RepID=U1EDR3_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EXI88121.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_28_3
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(856..1494)
DNA (639bp) protein (213aa)
Cobyrinic acid ac-diamide synthase n=8 Tax=Bacteria RepID=A9BTU4_DELAS
parA; ATPase involved in plasmid partitioning ParA; K03496 chromosome partitioning protein
ATPase involved in plasmid partitioning ParA {ECO:0000313|EMBL:ABF09896.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
scnpilot_solids2_trim150_scaffold_28_4
Pseudomonas plecoglossicida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1783..2436)
DNA (654bp) protein (218aa)
RepA replication protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI000313CC49
RepA replication protein {ECO:0000313|EMBL:AJG13755.1}; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
replication initiator and transcription repressor protein
scnpilot_solids2_trim150_scaffold_28_5
Cupriavidus oxalaticus, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2463..2747)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Burkholderiales RepID=Q84EQ5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CAD61129.1}; TaxID=96344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus oxalaticus.;"
putative transcriptional regulator (DNA binding protein)
scnpilot_solids2_trim150_scaffold_28_6
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2873..3628)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa VRFPA05 RepID=V4UWK2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EEE05463.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_28_7
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3943..4293)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=U3H8Q0_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:AKA21924.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
lipoprotein
scnpilot_solids2_trim150_scaffold_28_8
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4554..4847
DNA (294bp) protein (98aa)
XRE family transcriptional regulator n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=B3CYK6_BURM1
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABM31283.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_28_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4917..5231)
DNA (315bp) protein (105aa)
Uncharacterized protein n=3 Tax=Comamonadaceae RepID=E7FJ95_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ45814.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
scnpilot_solids2_trim150_scaffold_28_10
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5986..8028)
DNA (2043bp) protein (681aa)
Putative chromosome segregation protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WVN4_PSEDE
putative chromosome segregation protein
Putative chromosome segregation protein {ECO:0000313|EMBL:AGI23844.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
scnpilot_solids2_trim150_scaffold_28_11
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8111..8935)
DNA (825bp) protein (275aa)
Uncharacterized protein n=8 Tax=Pseudomonas aeruginosa RepID=K1CJX8_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKE69560.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
scnpilot_solids2_trim150_scaffold_28_12
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9667..10059)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6DDJ3_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EXI88134.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_28_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10338..10847)
DNA (510bp) protein (170aa)
DNA repair protein RadC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNX2_9GAMM
DNA repair protein RadC {ECO:0000313|EMBL:EIM01164.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA repair protein RadC
scnpilot_solids2_trim150_scaffold_28_14
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11192..11527
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MC09_PSEAI
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:KDD60164.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
arsR(3); ArsR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_28_15
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11493..11957
DNA (465bp) protein (155aa)
hypothetical protein; K01759 lactoylglutathione lyase [EC:4.4.1.5]
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SIB3_METPP
Glyoxalase {ECO:0000313|EMBL:AJW44612.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
scnpilot_solids2_trim150_scaffold_28_16
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11970..12467
DNA (498bp) protein (166aa)
arsCa; arsenate reductase (EC:1.20.4.1); K03741 arsenate reductase [EC:1.20.4.1]
Arsenate reductase {ECO:0000313|EMBL:CCH05069.1}; EC=1.20.4.1 {ECO:0000313|EMBL:CCH05069.1};; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
Arsenate reductase n=3 Tax=Proteobacteria RepID=A4G6H5_HERAR
scnpilot_solids2_trim150_scaffold_28_17
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12478..13740
DNA (1263bp) protein (421aa)
Putative sodium bile acid symporter family protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KT24_9BURK
Putative sodium bile acid symporter family protein {ECO:0000313|EMBL:EGI77066.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
scnpilot_solids2_trim150_scaffold_28_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13807..14973)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIZ6_ACIET
Putative cytoplasmic protein {ECO:0000313|EMBL:GAO22450.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_28_19
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14970..16319)
DNA (1350bp) protein (450aa)
integrase n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003658395 rbh
Integrase {ECO:0000313|EMBL:KEZ03616.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
integrase family protein
scnpilot_solids2_trim150_scaffold_28_20
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16601..17248)
DNA (648bp) protein (216aa)
Uncharacterized protein n=4 Tax=Vibrio nigripulchritudo RepID=U4DQ31_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:CCN42153.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
scnpilot_solids2_trim150_scaffold_28_21
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17351..17548)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida (strain DOT-T1E) RepID=I7CEZ0_PSEPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFO50449.1}; TaxID=1196325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain DOT-T1E).;"
scnpilot_solids2_trim150_scaffold_28_22
unknown

Not on your lists

comp(18908..19213)
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_28_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19280..19648
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000360CB48
Putative transcriptional regulator {ECO:0000313|EMBL:EJB08022.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
XRE family transcriptional regulator
scnpilot_solids2_trim150_scaffold_28_24
unknown

Not on your lists

comp(19708..19845)
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_28_25
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20137..21129
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TVS0_ACIAC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM35058.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_28_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21154..21831)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF51_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98092.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_28_27
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21939..22517)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002377884
Putative membrane protein {ECO:0000313|EMBL:EXI77487.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
NnrU
scnpilot_solids2_trim150_scaffold_28_28
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22524..22988)
DNA (465bp) protein (155aa)
cupin domain-containing protein n=1 Tax=Acidovorax radicis RepID=UPI0002378622
cupin domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids2_trim150_scaffold_28_29
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23066..24586
DNA (1521bp) protein (507aa)
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23129.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AJG23129.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000375675B
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
scnpilot_solids2_trim150_scaffold_28_30
Marinobacter algicola, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24680..25441)
DNA (762bp) protein (254aa)
yhdZ; amino-acid ABC transporter ATP-binding protein-like protein; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-] rbh
ABC transporter n=1 Tax=Marinobacter algicola DG893 RepID=A6F1A8_9ALTE rbh
ABC transporter {ECO:0000313|EMBL:EDM47425.1}; TaxID=443152 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter algicola DG893.;"
Displaying items 1-30 of 267 in total

View Taxonomy