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scnpilot_solids2_trim150_scaffold_2100

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2100_1

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comp(1..1629)
DNA (1629bp) protein (543aa)
alpha-glucan phosphorylase; K00688 starch phosphorylase [EC:2.4.1.1]
Alpha-glucan phosphorylase n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J1N6_CYCMS
Uncharacterized protein {ECO:0000313|EMBL:KKN85275.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_solids2_trim150_scaffold_2100_2
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2327..2866)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C320_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ76872.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_solids2_trim150_scaffold_2100_3
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2978..3424)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFX7_NIAKG
Contig6, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78808.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2100_4
unknown

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comp(3578..4012)
DNA (435bp) protein (145aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2100_5
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4586..5989)
DNA (1404bp) protein (468aa)
Secretion protein HlyD n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IH14_ANADE
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
Secretion protein HlyD {ECO:0000313|EMBL:ABC83869.1}; Flags: Precursor;; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
scnpilot_solids2_trim150_scaffold_2100_6
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6007..7140)
DNA (1134bp) protein (378aa)
Membrane-fusion protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUT7_SOLCM
membrane-fusion protein
Membrane-fusion protein {ECO:0000313|EMBL:AFD07571.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_2100_7
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7195..8481)
DNA (1287bp) protein (429aa)
Outer membrane protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUT6_SOLCM
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AFD07570.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_2100_8
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8478..10382)
DNA (1905bp) protein (635aa)
Putative silver efflux pump n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUT5_SOLCM
putative silver efflux pump
Putative silver efflux pump {ECO:0000313|EMBL:AFD07569.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_2100_9
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(10387..11382)
DNA (996bp) protein (332aa)
Putative silver efflux pump n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUT4_SOLCM
putative silver efflux pump
Putative silver efflux pump {ECO:0000313|EMBL:AFD07568.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_2100_10
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(11354..11542)
DNA (189bp) protein (63aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2P2_PEDHD
CzcA family heavy metal efflux pump
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ACU05252.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids2_trim150_scaffold_2100_11
unknown

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11589..11726
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2100_12
Beggiatoa sp. SS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12269..12508)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. SS RepID=A7BNF4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN71931.1}; TaxID=422288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. SS.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2100_13
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(12505..12879)
DNA (375bp) protein (125aa)
Transcriptional regulator, ArsR family n=3 Tax=Bacteroidetes RepID=F0S633_PEDSD
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EFK56953.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
scnpilot_solids2_trim150_scaffold_2100_14
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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13063..13218
DNA (156bp) protein (52aa)
ArsR family transcriptional regulator n=1 Tax=Cytophaga aurantiaca RepID=UPI0003701B86
Regulatory protein ArsR {ECO:0000313|EMBL:BAP30877.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
regulatory protein ArsR
Displaying 14 items

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