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scnpilot_solids2_trim150_scaffold_1627

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1627_1
unknown

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389..634
DNA (246bp) protein (82aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1627_2
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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761..3163
DNA (2403bp) protein (801aa)
Type I site-specific deoxyribonuclease {ECO:0000313|EMBL:ADQ15918.1}; EC=3.1.21.3 {ECO:0000313|EMBL:ADQ15918.1};; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
type i site-specific deoxyribonuclease (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I site-specific deoxyribonuclease id=1879850 bin=GWE2_Bacteroidetes_42_24 species=Leadbetterella byssophila genus=Leadbetterella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
scnpilot_solids2_trim150_scaffold_1627_3
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3203..4678
DNA (1476bp) protein (492aa)
N-6 DNA methylase id=1879848 bin=GWE2_Bacteroidetes_42_24 species=Emticicia oligotrophica genus=Emticicia taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
type I restriction-modification system methyltransferase subunit
Type I restriction-modification system methyltransferase subunit {ECO:0000313|EMBL:AGA76671.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_solids2_trim150_scaffold_1627_4
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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4675..5961
DNA (1287bp) protein (429aa)
Restriction modification system DNA specificity domain n=1 Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4U1K6_SULKY rbh
restriction modification system DNA specificity domain rbh
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ADR33442.1}; TaxID=709032 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
scnpilot_solids2_trim150_scaffold_1627_5
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5969..6967
DNA (999bp) protein (333aa)
Divergent AAA domain protein {ECO:0000313|EMBL:KHJ38059.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
Putative transcriptional regulator id=1933686 bin=GWB2_Bacteroidetes_32_14 species=Thermosipho melanesiensis genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47 rbh
putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_1627_6
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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7019..7903
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIT2_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:AHM59286.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1627_7
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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7906..8718
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003816C23 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHM59287.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_1627_8
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(9044..9553)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S8V1_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52432.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_1627_9
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(9564..10631)
DNA (1068bp) protein (356aa)
DNA-binding helix-turn-helix protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FW34_9SPHI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEI92814.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1627_10

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10870..11043
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Proteobacteria RepID=UPI00035EDC53
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD30587.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_1627_11
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11241..11885
DNA (645bp) protein (215aa)
Uncharacterized protein n=3 Tax=Bacteroidales RepID=C9KSJ9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EXZ52334.1}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
putative two-component system response regulatory protein
scnpilot_solids2_trim150_scaffold_1627_12
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11886..12908
DNA (1023bp) protein (341aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=C9KSJ8_9BACE
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EXZ52335.1}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
two-component system sensor histidine kinase
scnpilot_solids2_trim150_scaffold_1627_13
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(13069..13476)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3ZA79_BELBD
Transcriptional regulator {ECO:0000313|EMBL:KFF76240.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1627_14
unknown

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13618..14070
DNA (453bp) protein (151aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1627_15
unknown

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14285..14545
DNA (261bp) protein (87aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1627_16
unknown

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14646..15200
DNA (555bp) protein (185aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1627_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15306..15932
DNA (627bp) protein (209aa)
Histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMV3_CHIPD
Putative two-component histidine kinase {ECO:0000313|EMBL:GAO44882.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
histidine kinase
Displaying 17 items

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