ggKbase home page

scnpilot_solids2_trim150_scaffold_1948

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1948_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..2775)
DNA (2775bp) protein (925aa)
Excinuclease ABC, A subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE19_NIAKG
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
scnpilot_solids2_trim150_scaffold_1948_2
unknown

Not on your lists

comp(2772..2933)
DNA (162bp) protein (54aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1948_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2998..3579
DNA (582bp) protein (194aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE18_NIAKG
RNA polymerase, sigma subunit, ECF family; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO44916.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids2_trim150_scaffold_1948_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3669..4346)
DNA (678bp) protein (226aa)
phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=485918 species=
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSI3_CHIPD
scnpilot_solids2_trim150_scaffold_1948_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4386..5360)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE13_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC92559.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1948_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5445..6968)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FC872
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03560.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1948_7
unknown

Not on your lists

7402..7773
DNA (372bp) protein (124aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1948_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7860..8753)
DNA (894bp) protein (298aa)
ABC transporter related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCU0_NIAKG
ABC transporter; K09687 antibiotic transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:AEW03544.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1948_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8863..9525)
DNA (663bp) protein (221aa)
Peptidase m10a and m12b matrixin and adamalysin n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCU1_NIAKG
peptidase m10a and m12b matrixin and adamalysin
Peptidase m10a and m12b matrixin and adamalysin {ECO:0000313|EMBL:AEW03545.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1948_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9540..11945)
DNA (2406bp) protein (802aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCU2_NIAKG
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:AEW03546.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1948_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12136..13476)
DNA (1341bp) protein (447aa)
Allantoinase; K01465 dihydroorotase [EC:3.5.2.3]
Allantoinase {ECO:0000313|EMBL:AEW01783.1}; EC=3.5.2.5 {ECO:0000313|EMBL:AEW01783.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368831F
scnpilot_solids2_trim150_scaffold_1948_12
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13579..15168
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000362D28D
Uncharacterized protein {ECO:0000313|EMBL:KIC92499.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1948_13
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15219..16655)
DNA (1437bp) protein (479aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ERL3_EMTOG
two component, sigma54 specific, transcriptional regulator, Fis family
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:AFK02316.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
scnpilot_solids2_trim150_scaffold_1948_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16872..18299)
DNA (1428bp) protein (476aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NL05_9SPHI
PAS domain-containing protein
scnpilot_solids2_trim150_scaffold_1948_15
unknown

Not on your lists

comp(18306..18488)
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1948_16
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

18900..19220
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003649157
hypothetical protein
Tax=CG_Bacteroid_02
scnpilot_solids2_trim150_scaffold_1948_17
unknown

Not on your lists

19265..19492
DNA (228bp) protein (76aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1948_18
unknown

Not on your lists

19554..19943
DNA (390bp) protein (130aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1948_19
BJP_IG2102_Ignavibacteriales_35_8, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(19974..20915)
DNA (942bp) protein (314aa)
Beta-lactamase class A-like protein; K01467 beta-lactamase [EC:3.5.2.6] id=717502 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria rbh
Beta-lactamase class A-like protein; K01467 beta-lactamase [EC:3.5.2.6]
Tax=BJP_IG2102_Ignavibacteriales_35_8
scnpilot_solids2_trim150_scaffold_1948_20
unknown

Not on your lists

comp(20963..21124)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 20 items

View Taxonomy