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scnpilot_solids2_trim150_scaffold_872

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_872_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3..914
DNA (912bp) protein (304aa)
RHS repeat-associated core domain-containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YER8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO44102.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
YD repeat protein
scnpilot_solids2_trim150_scaffold_872_2
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

896..1939
DNA (1044bp) protein (348aa)
YD repeat protein n=1 Tax=Saprospira grandis (strain Lewin) RepID=H6L0G9_SAPGL
YD repeat protein
YD repeat protein {ECO:0000313|EMBL:AFC23399.1}; TaxID=984262 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis (strain Lewin).;"
scnpilot_solids2_trim150_scaffold_872_3
unknown

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1946..2218
DNA (273bp) protein (91aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_872_4
unknown

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comp(2302..2565)
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_872_5
Chlorobium chlorochromatii, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(2973..3836)
DNA (864bp) protein (288aa)
Putative DNA-binding protein n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AT89_CHLCH rbh
DNA-binding protein rbh
Putative DNA-binding protein {ECO:0000313|EMBL:ABB27786.1}; TaxID=340177 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium chlorochromatii (strain CaD3).;"
scnpilot_solids2_trim150_scaffold_872_6
unknown

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comp(4100..4204)
DNA (105bp) protein (35aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_872_7
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4738..7098
DNA (2361bp) protein (787aa)
Polysaccharide biosynthesis/export protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CWQ4_BACPM
Capsule polysaccharide export protein {ECO:0000313|EMBL:CEA15256.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
polysaccharide export protein
scnpilot_solids2_trim150_scaffold_872_8
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7106..8140
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2K096_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL66728.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
scnpilot_solids2_trim150_scaffold_872_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8208..8825
DNA (618bp) protein (206aa)
Recombination protein RecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7I8_NIAKG
DNA replication and repair protein RecR; K06187 recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_872_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(8885..12256)
DNA (3372bp) protein (1124aa)
exodeoxyribonuclease V; K03582 exodeoxyribonuclease V beta subunit [EC:3.1.11.5] rbh
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Exodeoxyribonuclease V n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDT4_CHIPD rbh
scnpilot_solids2_trim150_scaffold_872_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(12253..15426)
DNA (3174bp) protein (1058aa)
exodeoxyribonuclease V subunit gamma; K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] rbh
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Exodeoxyribonuclease V, gamma subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDT3_CHIPD rbh
scnpilot_solids2_trim150_scaffold_872_12
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(15423..17072)
DNA (1650bp) protein (550aa)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
exodeoxyribonuclease V subunit alpha; K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] rbh
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0003027741 rbh
scnpilot_solids2_trim150_scaffold_872_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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17554..18621
DNA (1068bp) protein (356aa)
4-hydroxythreonine-4-phosphate dehydrogenase; K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036659E3
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_872_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18780..19919
DNA (1140bp) protein (380aa)
Glycosyl transferase, family 4, conserved region-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL97_NIAKG
Glycosyl transferase {ECO:0000313|EMBL:KIC96119.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Glycosyl transferase, family 4, conserved region-containing protein
scnpilot_solids2_trim150_scaffold_872_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20027..20587
DNA (561bp) protein (187aa)
ribosome recycling factor n=1 Tax=Niabella aurantiaca RepID=UPI000372C9B3
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ribosome recycling factor; K02838 ribosome recycling factor
scnpilot_solids2_trim150_scaffold_872_16
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20848..21225
DNA (378bp) protein (126aa)
Large-conductance mechanosensitive channel n=1 Tax=Capnocytophaga sp. oral taxon 326 str. F0382 RepID=L1PVZ9_9FLAO
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
large conductance mechanosensitive channel protein
scnpilot_solids2_trim150_scaffold_872_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(21338..22609)
DNA (1272bp) protein (424aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003673921
scnpilot_solids2_trim150_scaffold_872_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

22752..23540
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037673B7
condensin subunit ScpA; K05896 segregation and condensation protein A
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_872_19
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(23537..24013)
DNA (477bp) protein (159aa)
Putative uncharacterized protein id=2995268 bin=GWF2_Bacteroidetes_35_48 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
hypothetical protein
Tax=GWF2_Bacteroidetes_35_48_curated
scnpilot_solids2_trim150_scaffold_872_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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24274..25761
DNA (1488bp) protein (496aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034CDBA6
Hemerythrin {ECO:0000313|EMBL:KIC89570.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
iron-sulfur cluster repair di-iron protein; K07322 regulator of cell morphogenesis and NO signaling
scnpilot_solids2_trim150_scaffold_872_21
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25914..26369
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFH2_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA45686.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_872_22
unknown

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26366..26470
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 22 items

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