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SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586

In projects: SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK

Properties

Avg. coverage: 585.61 Longest contig: 71.37 Kbp Bin length: 3.55 Mbp GC content: 40.13 %
Contigs count: 254 Features count: 3323 rRNAs count: 0 tRNAs count: 29

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 11 / 38
Displaying items 1-50 of 254 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_22938
Species: Niastella koreensis (50%)
2 1678 bp 37.90 433.02 61.86
scnpilot_solids2_trim150_scaffold_44698
Species: Arcticibacter svalbardensis (50%)
2 1202 bp 36.77 444.26 42.18
scnpilot_solids2_trim150_scaffold_22837
Species: Chitinophaga pinensis (100%)
1 1764 bp 45.80 445.83 99.83
scnpilot_solids2_trim150_scaffold_25893
Species: Saprospira grandis (100%)
1 1113 bp 39.53 447.04 86.52
scnpilot_solids2_trim150_scaffold_6954
Genus: Flavihumibacter (75%)
4 4320 bp 43.29 447.47 96.60
scnpilot_solids2_trim150_scaffold_18256
Species: Chitinophaga pinensis (66.67%)
3 1898 bp 40.67 448.97 95.94
scnpilot_solids2_trim150_scaffold_38600
Species: Flavihumibacter sp. ZG627 (50%)
2 1418 bp 44.22 450.21 98.80
scnpilot_solids2_trim150_scaffold_26138
Species: Solitalea canadensis (50%)
2 1106 bp 45.21 458.82 100.36
scnpilot_solids2_trim150_scaffold_53791
Species: Flavihumibacter petaseus (50%)
2 1027 bp 38.17 458.91 72.74
scnpilot_solids2_trim150_scaffold_10006
Order: Sphingobacteriales (50%)
6 4588 bp 41.15 459.38 89.39
scnpilot_solids2_trim150_scaffold_29299
Species: Niabella soli (100%)
1 1014 bp 41.52 464.50 78.40
scnpilot_solids2_trim150_scaffold_28455
Species: Flavihumibacter petaseus (100%)
1 1036 bp 44.11 468.53 99.90
scnpilot_solids2_trim150_scaffold_14946
Species: Flavihumibacter sp. ZG627 (50%)
2 2068 bp 40.14 468.86 86.17
scnpilot_solids2_trim150_scaffold_19629
Species: Flavihumibacter petaseus (50%)
2 1370 bp 39.78 473.43 89.78
scnpilot_solids2_trim150_scaffold_16126
Species: Niabella soli (50%)
2 1586 bp 41.11 473.46 88.34
scnpilot_solids2_trim150_scaffold_12406
Species: Flavihumibacter solisilvae (66.67%)
3 1933 bp 38.90 478.40 88.62
scnpilot_solids2_trim150_scaffold_4448
Species: Sphingobacterium sp. 21 (50%)
2 6533 bp 44.33 480.74 94.28
scnpilot_solids2_trim150_scaffold_2100
Order: Sphingobacteriales (57.14%)
14 13218 bp 42.42 481.45 82.27
scnpilot_solids2_trim150_scaffold_11880
Species: Niastella koreensis (66.67%)
3 1997 bp 36.40 482.00 99.15
scnpilot_solids2_trim150_scaffold_6449
Phylum: Bacteroidetes (66.67%)
6 6144 bp 41.37 484.28 97.56
scnpilot_solids2_trim150_scaffold_10267
Order: Sphingobacteriales (60%)
5 3412 bp 36.90 485.52 86.87
scnpilot_solids2_trim150_scaffold_4185
Species: Niabella soli (66.67%)
3 5522 bp 41.20 489.82 97.30
scnpilot_solids2_trim150_scaffold_8384
Order: Sphingobacteriales (50%)
4 2641 bp 36.16 491.29 93.71
scnpilot_solids2_trim150_scaffold_3477
Species: Flavihumibacter solisilvae (60%)
5 6846 bp 42.27 491.56 82.21
scnpilot_solids2_trim150_scaffold_11702
Species: Chitinophaga pinensis (50%)
4 2020 bp 40.99 495.97 80.35
scnpilot_solids2_trim150_scaffold_11541
Species: Pedobacter glucosidilyticus (100%)
1 2043 bp 40.09 496.04 74.89
scnpilot_solids2_trim150_scaffold_13455
Species: Niastella koreensis (50%)
2 1821 bp 41.90 496.62 98.02
scnpilot_solids2_trim150_scaffold_9902
Order: Sphingobacteriales (100%)
3 2912 bp 43.48 498.78 99.21
scnpilot_solids2_trim150_scaffold_5766
Phylum: Bacteroidetes (85.71%)
7 5225 bp 35.02 499.92 80.67
scnpilot_solids2_trim150_scaffold_4849
Order: Sphingobacteriales (54.55%)
11 12215 bp 40.07 502.72 83.90
scnpilot_solids2_trim150_scaffold_3450
Order: Sphingobacteriales (50%)
6 6920 bp 40.49 503.13 96.11
scnpilot_solids2_trim150_scaffold_2055
Phylum: Bacteroidetes (70%)
10 12098 bp 43.65 503.81 81.01
scnpilot_solids2_trim150_scaffold_3747
Phylum: Bacteroidetes (80%)
5 6736 bp 40.22 504.45 84.84
scnpilot_solids2_trim150_scaffold_2933
Phylum: Bacteroidetes (54.55%)
11 13856 bp 41.13 506.29 89.59
scnpilot_solids2_trim150_scaffold_2799
Phylum: Bacteroidetes (50%)
22 21536 bp 43.21 507.43 91.16
scnpilot_solids2_trim150_scaffold_1337
Phylum: Bacteroidetes (86.67%)
30 31258 bp 37.01 507.68 89.95
scnpilot_solids2_trim150_scaffold_41204
Species: Pedobacter antarcticus (50%)
2 1469 bp 45.34 510.14 41.87
scnpilot_solids2_trim150_scaffold_1349
Phylum: Bacteroidetes (80%)
10 16690 bp 38.71 511.93 95.48
scnpilot_solids2_trim150_scaffold_31461
Species: Chitinophaga pinensis (50%)
2 1314 bp 40.41 513.24 68.04
scnpilot_solids2_trim150_scaffold_14144
Species: Flavihumibacter petaseus (50%)
2 1753 bp 40.05 516.40 64.86
scnpilot_solids2_trim150_scaffold_29104
Species: Flavihumibacter petaseus (100%)
2 1826 bp 39.81 516.79 78.37
scnpilot_solids2_trim150_scaffold_2656
Phylum: Bacteroidetes (83.33%)
12 9686 bp 37.01 517.02 93.94
scnpilot_solids2_trim150_scaffold_8457
Species: Flavihumibacter petaseus (50%)
4 4282 bp 38.63 517.05 84.28
scnpilot_solids2_trim150_scaffold_14449
Species: Pedobacter antarcticus (100%)
1 1726 bp 41.95 518.83 60.66
scnpilot_solids2_trim150_scaffold_5819
Phylum: Bacteroidetes (71.43%)
7 7019 bp 41.44 518.92 85.57
scnpilot_solids2_trim150_scaffold_11195
Genus: Flavihumibacter (50%)
4 4316 bp 41.13 524.72 82.02
scnpilot_solids2_trim150_scaffold_10568
Species: Arcticibacter svalbardensis (50%)
6 6672 bp 42.03 525.00 86.11
scnpilot_solids2_trim150_scaffold_36433
Order: Sphingobacteriales (100%)
3 1969 bp 41.59 525.11 71.76
scnpilot_solids2_trim150_scaffold_31909
Species: Chitinophaga pinensis (50%)
2 1468 bp 42.44 525.92 67.85
scnpilot_solids2_trim150_scaffold_7258
Order: Sphingobacteriales (50%)
6 6055 bp 40.92 526.45 77.79
Displaying items 1-50 of 254 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.