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scnpilot_solids2_trim150_scaffold_231

Search features with annotation key words

Displaying items 61-90 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_231_60
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(57709..58548)
-----------------
DNA (840bp)
protein (280aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
murI; glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K910_9MICO rbh
scnpilot_solids2_trim150_scaffold_231_61
Arthrobacter sp. MWB30, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(58616..59557)
-----------------
DNA (942bp)
protein (314aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=1534409 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthro
murQ; N-acetylmuramic acid 6-phosphate etherase MurQ (EC:4.2.-.-) rbh
N-acetylmuramic acid-6-phosphate etherase n=1 Tax=Agromyces italicus RepID=UPI0003B4562A rbh
scnpilot_solids2_trim150_scaffold_231_62
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(59554..61059)
-----------------
DNA (1506bp)
protein (502aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
O-glycosyl hydrolase 3 protein; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KU36_9MICO rbh
scnpilot_solids2_trim150_scaffold_231_63
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

61144..62481
-----------------
DNA (1338bp)
protein (446aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
nicotinic acid phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] rbh
nicotinate phosphoribosyltransferase n=1 Tax=Microbacterium barkeri RepID=UPI00031037DE rbh
scnpilot_solids2_trim150_scaffold_231_64
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(62532..62798)
-----------------
DNA (267bp)
protein (89aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00035DD7A5
Uncharacterized protein {ECO:0000313|EMBL:KJL23157.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_231_65
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(62832..64400)
-----------------
DNA (1569bp)
protein (523aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00037F287D rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL28974.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein; K01992 ABC-2 type transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_231_66
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(64376..65275)
-----------------
DNA (900bp)
protein (300aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KJP8_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM78230.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
multidrug ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_231_67
Capsaspora owczarzaki, Capsaspora, Ichthyosporea, Eukaryota

Not on your lists

65292..66665
-----------------
DNA (1374bp)
protein (458aa)
Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) RepID=S4ACJ9_CAPO3
Uncharacterized protein {ECO:0000313|EMBL:KJE92880.1}; TaxID=595528 species="Eukaryota; Ichthyosporea; Capsaspora.;" source="Capsaspora owczarzaki (strain ATCC 30864).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_231_68
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

66703..67395
-----------------
DNA (693bp)
protein (231aa)
Bifunctional protein GlmU {ECO:0000313|EMBL:KJL28972.1}; EC=2.3.1.157 {ECO:0000313|EMBL:KJL28972.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
UDP-N-acetylglucosamine pyrophosphorylase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIW2_9MICO rbh
sugar nucleotidyltransferase rbh
scnpilot_solids2_trim150_scaffold_231_69
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

67485..68336
-----------------
DNA (852bp)
protein (284aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F70D34 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL23161.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_231_70
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

68415..68720
-----------------
DNA (306bp)
protein (102aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035C7724
Uncharacterized protein {ECO:0000313|EMBL:KJL27466.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
scnpilot_solids2_trim150_scaffold_231_71
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68727..68996)
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA06061.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids2_trim150_scaffold_231_72
Gordonia hirsuta, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

69130..70848
-----------------
DNA (1719bp)
protein (573aa)
type I restriction-modification system methyltransferase subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
Type I restriction enzyme M protein n=1 Tax=Gordonia hirsuta DSM 44140 = NBRC 16056 RepID=L7LBK8_9ACTO rbh
Type I restriction enzyme M protein {ECO:0000313|EMBL:GAC58495.1}; TaxID=1121927 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia hirsuta DSM 44140 = NBRC 16056.;"
scnpilot_solids2_trim150_scaffold_231_73

Not on your lists

70845..72116
-----------------
DNA (1272bp)
protein (424aa)
restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Type I restriction-modification system, S subunit n=3 Tax=mine drainage metagenome RepID=T1A8S0_9ZZZZ
Type I restriction-modification system, S subunit {ECO:0000313|EMBL:EQD53407.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids2_trim150_scaffold_231_74
Corynebacterium vitaeruminis, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

72301..72696
-----------------
DNA (396bp)
protein (132aa)
UPI0003D798F6 related cluster n=1 Tax=unknown RepID=UPI0003D798F6
Uncharacterized protein {ECO:0000313|EMBL:AHI22082.1}; TaxID=1224164 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium vitaeruminis DSM 20294.;"
scnpilot_solids2_trim150_scaffold_231_75
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72811..73122
-----------------
DNA (312bp)
protein (104aa)
XRE family transcriptional regulator n=2 Tax=Alcanivorax RepID=U7HJM0_9GAMM
HTH-type transcriptional regulator yddM
Tax=RBG_16_Gammaproteobacteria_51_14_curated
scnpilot_solids2_trim150_scaffold_231_76
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73381..74793)
-----------------
DNA (1413bp)
protein (471aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KEZ6_9MICO rbh
Contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95182.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
HNH endonuclease
scnpilot_solids2_trim150_scaffold_231_77
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(74893..75258)
-----------------
DNA (366bp)
protein (122aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ELM8_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF85590.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_231_78
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(75255..75677)
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein n=1 Tax=Longispora albida RepID=UPI000380B7F9
copG; copG family transcriptional regulator
Ribbon-helix-helix protein, copG family {ECO:0000313|EMBL:CCG04359.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
scnpilot_solids2_trim150_scaffold_231_79
Actinomyces sp. oral taxon 172, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

75744..78887
-----------------
DNA (3144bp)
protein (1048aa)
hsdR; type I restriction enzyme, R subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
Type III restriction enzyme, res subunit n=1 Tax=Actinomyces sp. oral taxon 172 str. F0311 RepID=U1QH47_9ACTO rbh
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:ERH26970.1}; TaxID=1321775 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. oral taxon 172 str. F0311.;"
scnpilot_solids2_trim150_scaffold_231_80
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(78891..79283)
-----------------
DNA (393bp)
protein (131aa)
twitching motility protein PilT n=1 Tax=Glaciibacter superstes RepID=UPI0003B3F718
PIN domain protein, Putative toxin of TAS system
PIN domain protein, Putative toxin of TAS system {ECO:0000313|EMBL:CCG04048.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
scnpilot_solids2_trim150_scaffold_231_81
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(79283..79564)
-----------------
DNA (282bp)
protein (94aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WIT1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAB92072.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
prevent-host-death protein, Putative antitoxin of TAS system
scnpilot_solids2_trim150_scaffold_231_82
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

80184..81050
-----------------
DNA (867bp)
protein (289aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000348A474
Uncharacterized protein {ECO:0000313|EMBL:KJQ54920.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_231_83
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

81135..82724
-----------------
DNA (1590bp)
protein (530aa)
pccB; acetyl-CoA carboxylase, carboxyltransferase component; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] rbh
methylmalonyl-CoA carboxyltransferase n=1 Tax=Microbacterium barkeri RepID=UPI0002D57CDC rbh
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95826.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids2_trim150_scaffold_231_84
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

82738..82956
-----------------
DNA (219bp)
protein (73aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KJQ3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM78235.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_231_85
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(83202..84203)
-----------------
DNA (1002bp)
protein (334aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002EE9AA0 rbh
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95823.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_231_86
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84200..85453)
-----------------
DNA (1254bp)
protein (418aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034BEC9B rbh
Histidine kinase {ECO:0000313|EMBL:EYT58475.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
signal transduction histidine kinase rbh
scnpilot_solids2_trim150_scaffold_231_87
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(85443..86105)
-----------------
DNA (663bp)
protein (221aa)
LuxR family transcriptional regulator n=1 Tax=Microbacterium barkeri RepID=UPI0002E0F00A rbh
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95822.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain rbh
scnpilot_solids2_trim150_scaffold_231_88
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(86160..87356)
-----------------
DNA (1197bp)
protein (399aa)
SAM-dependent methyltransferase; K00599 [EC:2.1.1.-] rbh
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000374F0F4 rbh
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95821.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids2_trim150_scaffold_231_89
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

87399..88055
-----------------
DNA (657bp)
protein (219aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003473418 rbh
Maf-like protein yceF {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
nucleotide-binding protein; K06287 septum formation protein rbh
Displaying items 61-90 of 119 in total

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