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scnpilot_solids2_trim150_scaffold_210

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_210_1
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

210..815
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00030802DD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH89159.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
scnpilot_solids2_trim150_scaffold_210_2
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

787..4713
DNA (3927bp) protein (1309aa)
Uncharacterized protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TST1_SALSV rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_210_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4731..5444
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380E93E
Uncharacterized protein {ECO:0000313|EMBL:BAR63523.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
scnpilot_solids2_trim150_scaffold_210_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5620..6774)
DNA (1155bp) protein (385aa)
Gp33 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J5Q1_POLGS
Gp33
Gp33 {ECO:0000313|EMBL:ADZ70135.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_210_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6771..7010)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKD7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63310.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_210_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7200..8327)
DNA (1128bp) protein (376aa)
Phage integrase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKD6_NITHX rbh
phage integrase rbh
Phage integrase {ECO:0000313|EMBL:ABE63311.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_210_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8517..8873)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0R8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33240.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_210_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9150..9581
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAH1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07591.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_210_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9615..10166
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAH0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG07592.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_210_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10299..11114)
DNA (816bp) protein (272aa)
rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase (EC:2.1.1.-); K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] rbh
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAG9_9BRAD rbh
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EFI50463.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_210_trna_3
unknown

Not on your lists

comp(11560..11630)
DNA (71bp)
transferRNA Gly
scnpilot_solids2_trim150_scaffold_210_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11895..12152
DNA (258bp) protein (86aa)
Transglycosylase-associated protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAG7_9BRAD
Transglycosylase-associated protein {ECO:0000313|EMBL:EFI50461.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_210_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12249..13934)
DNA (1686bp) protein (562aa)
Signal transduction histidine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAG4_9BRAD rbh
Blue-light-activated histidine kinase {ECO:0000313|EMBL:CEG07599.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
signal transduction histidine kinase rbh
scnpilot_solids2_trim150_scaffold_210_trna_1
unknown

Not on your lists

14116..14188
DNA (73bp)
transferRNA Trp
scnpilot_solids2_trim150_scaffold_210_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14349..15083
DNA (735bp) protein (245aa)
metallophosphoesterase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16] rbh
Metallophosphoesterase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAG2_9BRAD rbh
Diadenosine tetraphosphatase {ECO:0000313|EMBL:CEG07600.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_210_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15344..15535
DNA (192bp) protein (64aa)
Protein translocase subunit SecE n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAG1_9BRAD
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
scnpilot_solids2_trim150_scaffold_210_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15557..16087
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAG0_9BRAD rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG rbh
scnpilot_solids2_trim150_scaffold_210_16
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16234..16662
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF9_9BRAD
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
scnpilot_solids2_trim150_scaffold_210_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16669..17361
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF8_9BRAD rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
scnpilot_solids2_trim150_scaffold_210_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18054..18572
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF7_9BRAD rbh
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 rbh
scnpilot_solids2_trim150_scaffold_210_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18625..19002
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF6_9BRAD
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
scnpilot_solids2_trim150_scaffold_210_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19366..23502
DNA (4137bp) protein (1379aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=168932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis genospecies A.;"
rpoB; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta n=2 Tax=Afipia RepID=D6VAF5_9BRAD rbh
scnpilot_solids2_trim150_scaffold_210_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23624..27829
DNA (4206bp) protein (1402aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta' n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF4_9BRAD rbh
scnpilot_solids2_trim150_scaffold_210_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28138..30192
DNA (2055bp) protein (685aa)
Amine oxidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF3_9BRAD rbh
Amine oxidase {ECO:0000313|EMBL:EFI50447.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
amine oxidase rbh
scnpilot_solids2_trim150_scaffold_210_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30297..32240
DNA (1944bp) protein (648aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNJ0_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS27758.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial rbh
scnpilot_solids2_trim150_scaffold_210_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32585..33562
DNA (978bp) protein (326aa)
Methyltransferase FkbM family n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF1_9BRAD rbh
Methyltransferase, FkbM family {ECO:0000313|EMBL:CEG07613.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_210_25
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33559..34746
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAF0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI50444.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_210_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


35429..35800
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=5 Tax=Bradyrhizobiaceae RepID=F7QQ01_9BRAD
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
30S ribosomal subunit protein S12
scnpilot_solids2_trim150_scaffold_210_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


35816..36286
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAE8_9BRAD rbh
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
scnpilot_solids2_trim150_scaffold_210_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36320..38392
DNA (2073bp) protein (691aa)
Elongation factor G n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH64_AFIFE rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fusA; elongation factor G; K02355 elongation factor G rbh
Displaying items 1-30 of 83 in total

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