ggKbase home page

scnpilot_solids2_trim150_scaffold_393

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_393_1
bacterium YEK0313, Bacteria

Not on your lists

comp(3..296)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9AS24_BURM1
Uncharacterized protein {ECO:0000313|EMBL:CEJ16004.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_393_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(293..3571)
DNA (3279bp) protein (1093aa)
Acriflavin resistance protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHB9_OLICO rbh
Acriflavin resistance protein {ECO:0000313|EMBL:AEI05973.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
acriflavin resistance protein rbh
scnpilot_solids2_trim150_scaffold_393_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3568..4581)
DNA (1014bp) protein (338aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JHB8_OLICO rbh
membrane fusion protein rbh
Membrane fusion protein {ECO:0000313|EMBL:AEI05974.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_393_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4653..4853)
DNA (201bp) protein (67aa)
Conserved domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHB7_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05975.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_393_5
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4942..5316)
DNA (375bp) protein (125aa)
Regulatory protein ArsR n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B875_9RHIZ
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:AGK56746.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_393_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5494..6204)
DNA (711bp) protein (237aa)
lipoprotein-releasing system ATP-binding protein LolD (EC:3.6.3.-); K02003 putative ABC transport system ATP-binding protein rbh
Lipoprotein-releasing system ATP-binding protein LolD n=2 Tax=Oligotropha carboxidovorans RepID=B6JDR0_OLICO rbh
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000313|EMBL:CEG09644.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_393_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6206..7408)
DNA (1203bp) protein (401aa)
ABC transporter permease protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JDQ9_OLICO rbh
putative permease; K02004 putative ABC transport system permease protein rbh
Putative permease {ECO:0000313|EMBL:AEI07784.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_393_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7405..8598)
DNA (1194bp) protein (398aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JDQ8_OLICO rbh
Multidrug transporter MdtA {ECO:0000313|EMBL:CEG09646.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
RND family efflux transporter MFP subunit rbh
scnpilot_solids2_trim150_scaffold_393_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8705..9313)
DNA (609bp) protein (203aa)
Transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4D9_9RHIZ rbh
Synthetically lethal with a defective Min system protein A {ECO:0000313|EMBL:CEG09648.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_393_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9674..10135)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQI7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29730.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_393_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10186..10428)
DNA (243bp) protein (81aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3Z9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG06730.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_393_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10608..10937
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NU35_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29728.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
cytochrome c, class I
scnpilot_solids2_trim150_scaffold_393_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10979..12094)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGV1_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29727.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
putative ABC transporter substrate-binding protein; K02067 putative ABC transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_393_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12103..12882)
DNA (780bp) protein (260aa)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3Z6_9BRAD rbh
ABC transporter related protein {ECO:0000313|EMBL:EFI52676.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_393_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12885..14018)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3Z5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI52675.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative ABC transporter permease; K02066 putative ABC transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_393_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14185..14382
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMU9_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29724.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_393_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14646..15119)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NU29_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29723.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
heat shock protein; K13993 HSP20 family protein
scnpilot_solids2_trim150_scaffold_393_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15246..16229
DNA (984bp) protein (328aa)
adh1; Zn-dependent alcohol dehydrogenase Adh (EC:1.1.1.1); K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] rbh
Zinc-binding alcohol dehydrogenase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGU6_AFIFE rbh
Zinc-binding alcohol dehydrogenase {ECO:0000313|EMBL:EKS29722.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_393_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16311..17045
DNA (735bp) protein (245aa)
Putative signal transduction protein with CBS domains n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3Z1_9BRAD rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:CEG06738.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
transporter rbh
scnpilot_solids2_trim150_scaffold_393_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17638..18318
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NU22_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29718.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fixK2; transcriptional regulator; K15861 CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein rbh
scnpilot_solids2_trim150_scaffold_393_21
unknown

Not on your lists

comp(18406..18603)
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_393_22
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18600..19073)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=F8BXV0_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07629.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_393_trna_2
unknown

Not on your lists

comp(19614..19685)
DNA (72bp)
transferRNA Thr
scnpilot_solids2_trim150_scaffold_393_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19923..20114
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V735_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI51045.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_393_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20191..20691
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V736_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09500.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_393_25
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20838..22127
DNA (1290bp) protein (430aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V737_9BRAD rbh
scnpilot_solids2_trim150_scaffold_393_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22186..22650
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V738_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI51048.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_393_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22729..24024
DNA (1296bp) protein (432aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hisD; histidinol dehydrogenase HisD (EC:1.1.1.23); K00013 histidinol dehydrogenase [EC:1.1.1.23] rbh
Histidinol dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V739_9BRAD rbh
scnpilot_solids2_trim150_scaffold_393_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24021..24518
DNA (498bp) protein (166aa)
UPF0262 protein HMPREF9697_02218 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQC9_AFIFE rbh
UPF0262 protein HMPREF9697_02218 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_393_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24580..25047
DNA (468bp) protein (156aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Afipia sp. 1NLS2 RepID=D6V741_9BRAD rbh
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:EFI51051.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
low molecular weight phosphotyrosine protein phosphatase
Displaying items 1-30 of 50 in total

View Taxonomy