ggKbase home page

scnpilot_solids2_trim150_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 520 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_0_trna_4
unknown

Not on your lists

comp(319..391)
DNA (73bp)
transferRNA Phe
scnpilot_solids2_trim150_scaffold_0_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(481..2742)
DNA (2262bp) protein (754aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDZ7_NIAKG
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:KIC96524.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids2_trim150_scaffold_0_2
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3246..4601
DNA (1356bp) protein (452aa)
peptidase M48 n=1 Tax=Pontibacter roseus RepID=UPI00037D2712 rbh
TPR repeat-containing protein YfgC {ECO:0000313|EMBL:KHJ37303.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
peptidase M48 Ste24p rbh
scnpilot_solids2_trim150_scaffold_0_3
unknown

Not on your lists

4672..5073
DNA (402bp) protein (134aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_0_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5078..5971
DNA (894bp) protein (298aa)
dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Niabella soli DSM 19437 RepID=H1NPV5_9SPHI
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AHF14909.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids2_trim150_scaffold_0_5
unknown

Not on your lists

6005..6280
DNA (276bp) protein (92aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_0_6
unknown

Not on your lists

6583..8079
DNA (1497bp) protein (499aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_0_7
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8148..8522
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036A2FB5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL24472.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_solids2_trim150_scaffold_0_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8534..9331
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037D06FA
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:AHF16280.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K08590 carbon-nitrogen hydrolase family protein
scnpilot_solids2_trim150_scaffold_0_9
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9359..9727
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P098_WEEVC
hypothetical protein; K09922 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX68458.1}; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC; 16016 / NCTC 11634 / CL345/78).;"
scnpilot_solids2_trim150_scaffold_0_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9762..11243)
DNA (1482bp) protein (494aa)
Peptidase S41 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCK5_NIAKG
peptidase S41
Peptidase S41 {ECO:0000313|EMBL:AEW02545.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_0_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11372..12403)
DNA (1032bp) protein (344aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
thiamine-phosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
thiamine-monophosphate kinase n=1 Tax=Niabella aurantiaca RepID=UPI00037B2407
scnpilot_solids2_trim150_scaffold_0_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(12435..13199)
DNA (765bp) protein (255aa)
inositol-phosphate phosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F017D
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_0_13
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13237..14487
DNA (1251bp) protein (417aa)
Putative glycosyltransferase n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R3X3_OWEHD
Uncharacterized protein {ECO:0000313|EMBL:KJF43905.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
putative glycosyltransferase
scnpilot_solids2_trim150_scaffold_0_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14477..15466)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000361340A
glycosyl transferase family protein
Glycosyltransferase 28 domain protein {ECO:0000313|EMBL:ACU58208.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_0_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15794..16042
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC96311.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids2_trim150_scaffold_0_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16039..16641)
DNA (603bp) protein (201aa)
translation factor Sua5 n=1 Tax=Segetibacter koreensis RepID=UPI0003709EE8
Putative L-threonylcarbamoyladenylate synthase {ECO:0000313|EMBL:GAO42141.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
scnpilot_solids2_trim150_scaffold_0_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16753..17676
DNA (924bp) protein (308aa)
PfkB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7M1_NIAKG rbh
PfkB domain-containing protein rbh
PfkB domain protein {ECO:0000313|EMBL:AEW02276.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_0_18
unknown

Not on your lists

17687..17974
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_0_19
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18008..19591)
DNA (1584bp) protein (528aa)
Drug resistance MFS transporter, drug:H+ antiporter-2 family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W718_9FLAO rbh
Drug resistance MFS transporter, drug:H+ antiporter-2 family {ECO:0000313|EMBL:EFK33468.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
EmrB/QacA subfamily drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B rbh
scnpilot_solids2_trim150_scaffold_0_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19598..20722)
DNA (1125bp) protein (375aa)
Secretion protein HlyD family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNA0_9SPHI rbh
Secretion protein HlyD {ECO:0000313|EMBL:AHF15329.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
scnpilot_solids2_trim150_scaffold_0_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20745..22037)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000365F9A3 rbh
Transporter {ECO:0000313|EMBL:AHF15330.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
outer membrane efflux protein
scnpilot_solids2_trim150_scaffold_0_22
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22052..22669)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000366FDA7
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:GAO41268.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_0_23
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

comp(22793..25405)
DNA (2613bp) protein (871aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI000360548E
hypothetical protein
Tax=CG_Bacteroid_01
scnpilot_solids2_trim150_scaffold_0_24
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25429..25521
DNA (93bp) protein (31aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
aspartate-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
aspartate-semialdehyde dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI00037CA623
scnpilot_solids2_trim150_scaffold_0_25
unknown

Not on your lists

25518..26510
DNA (993bp) protein (331aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_0_26
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26534..27127
DNA (594bp) protein (198aa)
Putative uncharacterized protein id=3700766 bin=GWF2_Bacteroidetes_49_14 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_solids2_trim150_scaffold_0_27
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27690..28589)
DNA (900bp) protein (300aa)
membrane protein n=1 Tax=Pedobacter agri RepID=UPI00029A1EA1 rbh
Membrane protein {ECO:0000313|EMBL:ETZ20772.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB rbh
scnpilot_solids2_trim150_scaffold_0_28
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28806..29846)
DNA (1041bp) protein (347aa)
2-oxoglutarate synthase; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3]
2-oxoglutarate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG99_NIAKG
2-oxoacid:ferredoxin oxidoreductase subunit beta {ECO:0000313|EMBL:KIC96492.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids2_trim150_scaffold_0_29
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29902..30258)
DNA (357bp) protein (119aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00035D9415
alkylhydroperoxidase
Displaying items 1-30 of 520 in total

View Taxonomy