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scnpilot_solids2_trim150_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 245 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_78_16S_1
unknown

Not on your lists

comp(1..572)
DNA (572bp)
16S ribosomal RNA (16S rRNA)
scnpilot_solids2_trim150_scaffold_78_1
unknown

Not on your lists

comp(1222..3828)
DNA (2607bp) protein (869aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_78_2
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3830..4651)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L8A9_ZOBGA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ97443.1}; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
scnpilot_solids2_trim150_scaffold_78_3
unknown

Not on your lists

comp(4807..4956)
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_78_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5215..5949)
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB28_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_78_5
Bizionia argentinensis, Bizionia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5949..8576)
DNA (2628bp) protein (876aa)
Putative uncharacterized protein n=1 Tax=Bizionia argentinensis JUB59 RepID=G2EC12_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EGV43957.1}; TaxID=1046627 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Bizionia.;" source="Bizionia argentinensis JUB59.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_78_6
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8579..9436)
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Elizabethkingia anophelis RepID=L8K4U0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ELR78616.1}; TaxID=1246994 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis R26.;"
GLPGLI family protein
scnpilot_solids2_trim150_scaffold_78_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9527..10801)
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364C960
Uncharacterized protein {ECO:0000313|EMBL:AHF17577.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_78_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11024..13471
DNA (2448bp) protein (816aa)
Peptidase M1 membrane alanine aminopeptidase; K01256 aminopeptidase N [EC:3.4.11.2]
Peptidase M1 membrane alanine aminopeptidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB30_NIAKG
Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:AEW01377.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_78_9
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13540..14295)
DNA (756bp) protein (252aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Superoxide dismutase n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZNW3_9BACT
superoxide dismutase
scnpilot_solids2_trim150_scaffold_78_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14310..15728)
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036D7C47 rbh
Permease {ECO:0000313|EMBL:KIC90571.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
YjgP/YjgQ family permease rbh
scnpilot_solids2_trim150_scaffold_78_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15794..16384
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03252.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_78_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16386..16799)
DNA (414bp) protein (138aa)
Activator of HSP90 ATPase 1 family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK6_NIAKG
activator of HSP90 ATPase 1 family protein
Activator of HSP90 ATPase 1 family protein {ECO:0000313|EMBL:AEW03253.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_78_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17015..17890
DNA (876bp) protein (292aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK7_NIAKG
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor
RNA polymerase, sigma 70 subunit, RpoD subfamily {ECO:0000313|EMBL:AEW03254.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_78_14
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17895..18317)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003606F5E
thioesterase
Putative thioesterase {ECO:0000313|EMBL:AFM03303.1}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 /; NCIMB 1366 / Sio-4).;"
scnpilot_solids2_trim150_scaffold_78_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


comp(18298..18894)
DNA (597bp) protein (199aa)
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU58_CHIPD
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_78_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18896..19384)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003764407
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00953.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_78_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19438..20505
DNA (1068bp) protein (356aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035CDC72 rbh
scnpilot_solids2_trim150_scaffold_78_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


20708..21082
DNA (375bp) protein (125aa)
30S ribosomal protein S12 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNB6_9SPHI
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
scnpilot_solids2_trim150_scaffold_78_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


21130..21597
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=1 Tax=Niabella aurantiaca RepID=UPI00035F4F68
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
scnpilot_solids2_trim150_scaffold_78_20
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21671..22159)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELZ9_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI49824.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_78_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22179..23387)
DNA (1209bp) protein (403aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] rbh
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Diaminopimelate decarboxylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ8_NIAKG rbh
scnpilot_solids2_trim150_scaffold_78_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23469..24185)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036AFFB0
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
scnpilot_solids2_trim150_scaffold_78_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(24220..25101)
DNA (882bp) protein (294aa)
ATP synthase F1 subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
ATP synthase gamma chain n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PV56_CHIPD
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_78_24
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25521..28844
DNA (3324bp) protein (1108aa)
preprotein translocase subunit SecA n=1 Tax=Segetibacter koreensis RepID=UPI00037B0218 rbh
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
protein translocase subunit secA; K03070 preprotein translocase subunit SecA
scnpilot_solids2_trim150_scaffold_78_25
unknown

Not on your lists

comp(29062..29253)
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_78_26
unknown

Not on your lists

comp(29258..29704)
DNA (447bp) protein (149aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_78_27
unknown

Not on your lists

comp(29698..31464)
DNA (1767bp) protein (589aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_78_28
unknown

Not on your lists

comp(31687..32007)
DNA (321bp) protein (107aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_78_29
unknown

Not on your lists

comp(32294..32611)
DNA (318bp) protein (106aa)

This feature has no annotations

Displaying items 1-30 of 245 in total

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