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scnpilot_solids2_trim150_scaffold_284

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_284_1
Micromonas sp. RCC299, Micromonas, Mamiellales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(1..2166)
DNA (2166bp) protein (722aa)
Predicted protein n=1 Tax=Micromonas sp. (strain RCC299 / NOUM17) RepID=C1FFK9_MICSR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO69390.1}; TaxID=296587 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.;" source="Micromonas sp. (strain RCC299 / NOUM17) (Picoplanktonic green alga).;"
scnpilot_solids2_trim150_scaffold_284_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(2314..3282)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PE8_SOLUE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABJ88472.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
scnpilot_solids2_trim150_scaffold_284_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3354..5438)
DNA (2085bp) protein (695aa)
beta-glucosidase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI0003758B79
beta-glucosidase-like glycosyl hydrolase
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:AGG87354.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_284_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5452..7704)
DNA (2253bp) protein (751aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B64DD4 rbh
TonB-dependent receptor {ECO:0000313|EMBL:GAO53600.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor rbh
scnpilot_solids2_trim150_scaffold_284_5
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7796..9172)
DNA (1377bp) protein (459aa)
sulfatase family protein (EC:3.1.6.-) rbh
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036DDC24 rbh
Sulfatase family protein {ECO:0000313|EMBL:EJU11930.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
scnpilot_solids2_trim150_scaffold_284_6
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9508..10575
DNA (1068bp) protein (356aa)
PREDICTED: uncharacterized protein LOC102317426 n=1 Tax=Pantholops hodgsonii RepID=UPI0003C11E76 rbh
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADG09871.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
scnpilot_solids2_trim150_scaffold_284_7
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10651..11616
DNA (966bp) protein (322aa)
Glucokinase {ECO:0000256|HAMAP-Rule:MF_00524}; EC=2.7.1.2 {ECO:0000256|HAMAP-Rule:MF_00524};; Glucose kinase {ECO:0000256|HAMAP-Rule:MF_00524}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
Glucokinase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSY3_PSEUU
scnpilot_solids2_trim150_scaffold_284_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11641..12930
DNA (1290bp) protein (430aa)
PREDICTED: sodium-dependent glucose transporter 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15CB3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF06192.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
glucose/galactose transporter; K02429 MFS transporter, FHS family, L-fucose permease rbh
scnpilot_solids2_trim150_scaffold_284_9
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13352..14356)
DNA (1005bp) protein (335aa)
UPI0003CFF6F4 related cluster n=1 Tax=unknown RepID=UPI0003CFF6F4 rbh
NADP-dependent oxidoreductase {ECO:0000313|EMBL:ESZ86621.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
alcohol dehydrogenase; K07119
scnpilot_solids2_trim150_scaffold_284_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14395..15156)
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQJ9_PARL1 rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS62182.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_284_11
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15157..16542)
DNA (1386bp) protein (462aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B75F13
Rieske (2Fe-2S) domain-containing protein rbh
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:CCA90176.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_solids2_trim150_scaffold_284_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16779..17891)
DNA (1113bp) protein (371aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
Alpha/beta hydrolase fold n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZD00_GLUDA rbh
Acetoin dehydrogenase {ECO:0000313|EMBL:KGM34641.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
scnpilot_solids2_trim150_scaffold_284_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17896..18933)
DNA (1038bp) protein (346aa)
pdhB; pyruvate dehydrogenase E1 component subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Putative pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HHP7_GLUDA
Pyruvate dehydrogenase {ECO:0000313|EMBL:KEO92359.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
scnpilot_solids2_trim150_scaffold_284_14
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18957..19922)
DNA (966bp) protein (322aa)
ABC transporter substrate-binding protein n=1 Tax=Acinetobacter nosocomialis M2 RepID=V6INF4_9GAMM rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEO92360.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha rbh
scnpilot_solids2_trim150_scaffold_284_15
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20201..21556
DNA (1356bp) protein (452aa)
Major facilitator superfamily MFS_1 n=2 Tax=Pseudomonas mendocina RepID=A4XR79_PSEMY rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO92365.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
major facilitator superfamily transporter rbh
scnpilot_solids2_trim150_scaffold_284_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21575..22336
DNA (762bp) protein (254aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT78_9GAMM
putative oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
scnpilot_solids2_trim150_scaffold_284_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22339..23088
DNA (750bp) protein (250aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:CDP54159.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CDP54159.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
KR domain superfamily protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT46_9GAMM
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_284_18
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23099..23869
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5R9_9GAMM
Trehalose utilization {ECO:0000313|EMBL:ETN91441.1}; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_284_19
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23888..25177
DNA (1290bp) protein (430aa)
Linalool 8-monooxygenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B41869
Uncharacterized protein {ECO:0000313|EMBL:KEO92363.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
cytochrome P450
scnpilot_solids2_trim150_scaffold_284_20
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25230..25922
DNA (693bp) protein (231aa)
TetR family transcriptional regulator n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000376544C
Uncharacterized protein {ECO:0000313|EMBL:KEO92364.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_284_21
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26078..28489)
DNA (2412bp) protein (804aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VHZ3_9SPHN rbh
Scaffold15, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30963.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor rbh
scnpilot_solids2_trim150_scaffold_284_22
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28866..29408
DNA (543bp) protein (181aa)
Carboxymuconolactone decarboxylase n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZX07_DESOH
Uncharacterized protein {ECO:0000313|EMBL:KEO92368.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
carboxymuconolactone decarboxylase
scnpilot_solids2_trim150_scaffold_284_23
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29413..30450
DNA (1038bp) protein (346aa)
Oxidoreductase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y6T0_9RHOO rbh
Oxidoreductase {ECO:0000313|EMBL:ENO87285.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
alcohol dehydrogenase; K07119 rbh
scnpilot_solids2_trim150_scaffold_284_24
unknown

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30661..30855
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_284_25
unknown

Not on your lists

30828..30968
DNA (141bp) protein (47aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_284_trna_1
unknown

Not on your lists

comp(31247..31319)
DNA (73bp)
transferRNA Lys
scnpilot_solids2_trim150_scaffold_284_26
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31585..32736)
DNA (1152bp) protein (384aa)
Rod shape-determining protein RodA n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW09_PARL1 rbh
Rod shape-determining protein RodA {ECO:0000313|EMBL:GAK44818.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
rod shape-determining protein RodA; K05837 rod shape determining protein RodA rbh
scnpilot_solids2_trim150_scaffold_284_27
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32742..34631)
DNA (1890bp) protein (630aa)
Peptidoglycan glycosyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW08_PARL1 rbh
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:GAK44819.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
peptidoglycan glycosyltransferase; K05515 penicillin-binding protein 2 rbh
scnpilot_solids2_trim150_scaffold_284_28
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34631..35155)
DNA (525bp) protein (175aa)
Rod shape-determining protein MreD n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW07_PARL1
rod shape-determining protein MreD; K03571 rod shape-determining protein MreD
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
scnpilot_solids2_trim150_scaffold_284_29
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35182..36186)
DNA (1005bp) protein (335aa)
Cell shape-determining protein MreC n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW06_PARL1
Rod shape-determining protein MreC {ECO:0000313|EMBL:GAK44821.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
Displaying items 1-30 of 73 in total

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