ggKbase home page

scnpilot_solids2_trim150_scaffold_290

Search features with annotation key words

Displaying items 1-30 of 161 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_290_1
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

20..373
DNA (354bp) protein (118aa)
Putative uncharacterized protein id=1698714 bin=GWA2_Polynucleobacter_45_21 species=Ralstonia pickettii genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Polynucleobacter_45_21 organism_group=Betaproteobacteria
RSp0576; hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
scnpilot_solids2_trim150_scaffold_290_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

377..868
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AHE3_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIB12681.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
scnpilot_solids2_trim150_scaffold_290_3
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

868..2499
DNA (1632bp) protein (544aa)
Putative resolvase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AHE4_AZOBR rbh
Uncharacterized protein {ECO:0000313|EMBL:AIB12682.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative resolvase rbh
scnpilot_solids2_trim150_scaffold_290_trna_1
unknown

Not on your lists

comp(2942..3015)
DNA (74bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_290_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3374..4528
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z504_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDO58256.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_290_5
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4588..5442)
DNA (855bp) protein (285aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Carboxymethylenebutenolidase, putative {ECO:0000313|EMBL:ACI98926.1}; EC=3.1.1.45 {ECO:0000313|EMBL:ACI98926.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Carboxymethylenebutenolidase, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IN29_RHOCS
scnpilot_solids2_trim150_scaffold_290_6
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5439..5810)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Bdellovibrio exovorus JSS RepID=M4VDS4_9DELT
Peptidase, T4 family {ECO:0000313|EMBL:CDO58258.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_290_7
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6557..7318)
DNA (762bp) protein (254aa)
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
Trans-aconitate 2-methyltransferase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TZQ7_9PROT
tam; trans-aconitate 2-methyltransferase
scnpilot_solids2_trim150_scaffold_290_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7315..8763)
DNA (1449bp) protein (483aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPU5_PARL1
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_290_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9724..11550
DNA (1827bp) protein (609aa)
Membrane protein insertase YidC n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VMG6_RHOPX
membrane protein insertase; K03217 preprotein translocase subunit YidC
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids2_trim150_scaffold_290_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11560..12213
DNA (654bp) protein (218aa)
Probable GTP-binding protein EngB n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPT8_PARL1
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_290_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12254..13171
DNA (918bp) protein (306aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
argB; acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] rbh
Acetylglutamate kinase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NRY5_AZOS1 rbh
scnpilot_solids2_trim150_scaffold_290_12
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13168..14208
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C544_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ46993.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_290_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14187..15446)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPT5_PARL1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS61918.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_290_14
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15584..16291
DNA (708bp) protein (236aa)
HAD family hydrolase n=1 Tax=Sphingobium baderi LL03 RepID=T0G8K3_9SPHN
HAD family hydrolase {ECO:0000313|EMBL:EQB00076.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
pyrimidine 5-nucleotidase; K07025 putative hydrolase of the HAD superfamily
scnpilot_solids2_trim150_scaffold_290_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16292..17116
DNA (825bp) protein (275aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUN9_9RHIZ
scnpilot_solids2_trim150_scaffold_290_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17094..17984)
DNA (891bp) protein (297aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VDR7_CAUST
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADG08617.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
scnpilot_solids2_trim150_scaffold_290_17
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18047..19210
DNA (1164bp) protein (388aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
dapE; Succinyl-diaminopimelate desuccinylase (SDAP); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] rbh
Succinyl-diaminopimelate desuccinylase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8G9_AZOL4 rbh
scnpilot_solids2_trim150_scaffold_290_18
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19207..20019
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHX7_9DELT
scnpilot_solids2_trim150_scaffold_290_19
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20013..20750)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] rbh
tRNA pseudouridine synthase A n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD75_9RHIZ
scnpilot_solids2_trim150_scaffold_290_20
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20750..21664)
DNA (915bp) protein (305aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EF39E
scnpilot_solids2_trim150_scaffold_290_21
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21678..22196)
DNA (519bp) protein (173aa)
def; peptide deformylase Def (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D54A31
scnpilot_solids2_trim150_scaffold_290_22
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22273..23826
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037EFE3C
hypothetical protein; K09760 DNA recombination protein RmuC
Uncharacterized protein {ECO:0000313|EMBL:ACU89180.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
scnpilot_solids2_trim150_scaffold_290_23
unknown

Not on your lists

comp(24168..24524)
DNA (357bp) protein (119aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_290_24
unknown

Not on your lists

comp(25085..25306)
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_290_25
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25361..25936)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000344AA39
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADX55749.1}; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
scnpilot_solids2_trim150_scaffold_290_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25974..26255)
DNA (282bp) protein (94aa)
Plasmid stabilization system n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RB5_RHOP5
plasmid stabilization system protein
Plasmid stabilization system {ECO:0000313|EMBL:ABJ05519.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
scnpilot_solids2_trim150_scaffold_290_27
unknown

Not on your lists

comp(26252..26470)
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_290_28
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26504..27205)
DNA (702bp) protein (234aa)
Recombination protein RecR n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFL2_9RHOB
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
recR; recombination protein RecR; K06187 recombination protein RecR
scnpilot_solids2_trim150_scaffold_290_29
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27296..27622)
DNA (327bp) protein (109aa)
Nucleoid-associated protein HMPREF0731_1634 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKM4_9PROT
Nucleoid-associated protein HMPREF0731_1634 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein; K09747 hypothetical protein
Displaying items 1-30 of 161 in total

View Taxonomy