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scnpilot_solids2_trim150_scaffold_521

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_521_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1453
DNA (1452bp) protein (484aa)
Flavin-binding family monooxygenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRE3_PARL1 rbh
flavin-binding family monooxygenase rbh
Flavin-binding family monooxygenase {ECO:0000313|EMBL:ABS62476.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_521_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1474..3300)
DNA (1827bp) protein (609aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Phosphomethylpyrimidine synthase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K4B8_9PROT rbh
thiC; thiamine biosynthesis protein ThiC (5'-phosphoryl-5-aminoimidazole, 4-amino-5-hydroxymethyl-2-methylpyrimidine-P) rbh
scnpilot_solids2_trim150_scaffold_521_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3461..3919
DNA (459bp) protein (153aa)
GCN5-related N-acetyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSS2_PARL1
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABS62955.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_521_4
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3942..4748)
DNA (807bp) protein (269aa)
amidase n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B40AD0 rbh
Creatininase {ECO:0000313|EMBL:EAP88725.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
creatininase rbh
scnpilot_solids2_trim150_scaffold_521_5
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4906..6051
DNA (1146bp) protein (382aa)
CAIB/BAIF CoA-transferase, family III n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C5U7_HYPNA rbh
Carnitine dehydratase {ECO:0000313|EMBL:KJS27941.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
L-carnitine dehydratase rbh
scnpilot_solids2_trim150_scaffold_521_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6110..8044
DNA (1935bp) protein (645aa)
acetate--CoA ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] rbh
Acetyl-coenzyme A synthetase {ECO:0000255|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000255|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000255|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000255|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000255|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000255|HAMAP-Rule:MF_01123}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 1
Acetyl-coenzyme A synthetase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=ACSA_PARL1 rbh
scnpilot_solids2_trim150_scaffold_521_7
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8109..8966
DNA (858bp) protein (286aa)
Putative beta-lactamase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G027_9BRAD
Beta-lactamase-like {ECO:0000313|EMBL:GAK43642.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
putative beta-lactamase
scnpilot_solids2_trim150_scaffold_521_8
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8948..9241)
DNA (294bp) protein (98aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RX64_9BRAD
scnpilot_solids2_trim150_scaffold_521_9
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9334..9735
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RW22_9BRAD
Zn-dependent protease {ECO:0000313|EMBL:KHJ53534.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_521_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9732..10280)
DNA (549bp) protein (183aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
2''-5'' RNA ligase n=1 Tax=Rhizobium sp. CF080 RepID=J2RU63_9RHIZ
scnpilot_solids2_trim150_scaffold_521_11
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10277..11824)
DNA (1548bp) protein (516aa)
Integral membrane protein MviN n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5X0_HYPSM
Integral membrane protein MviN; K03980 virulence factor
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scnpilot_solids2_trim150_scaffold_521_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11832..12485)
DNA (654bp) protein (218aa)
Arylesterase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZVW5_9PROT
Acyl-CoA thioesterase {ECO:0000313|EMBL:KJB92348.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
G-D-S-L family lipolytic protein
scnpilot_solids2_trim150_scaffold_521_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12549..13253
DNA (705bp) protein (235aa)
ABC transporter related n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSY0_PARL1
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABS63013.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_521_14
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13250..15793
DNA (2544bp) protein (848aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSY1_PARL1
ABC transporter, permease protein, putative {ECO:0000313|EMBL:CDO59554.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_521_15
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15794..16276)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Spongiibacter tropicus RepID=UPI0003B471E3
MarR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids2_trim150_scaffold_521_16
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16270..17091)
DNA (822bp) protein (274aa)
Phytanoyl-CoA dioxygenase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQ21_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
scnpilot_solids2_trim150_scaffold_521_17
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17223..17747)
DNA (525bp) protein (175aa)
acetyltransferase, GNAT family; K03824 putative acetyltransferase [EC:2.3.1.-]
Putative acetyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2GVT7_9CAUL
Putative acetyltransferase {ECO:0000313|EMBL:EJL34530.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids2_trim150_scaffold_521_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17858..18601
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003755C6B
Membrane protein {ECO:0000313|EMBL:KKB07778.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SecY stabilizing membrane protein
scnpilot_solids2_trim150_scaffold_521_19
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18666..19232
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000376C032
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC45445.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
scnpilot_solids2_trim150_scaffold_521_20
Oceaniovalibus guishaninsula, Oceaniovalibus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19207..19620)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HMP3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EKE44109.1}; TaxID=1231392 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceaniovalibus.;" source="Oceaniovalibus guishaninsula JLT2003.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_521_21
cyanobacterium endosymbiont of Epithemia turgida, Cyanobacteria, Bacteria

Not on your lists

comp(19672..20331)
DNA (660bp) protein (220aa)
O-methyltransferase family 3 n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KFU6_CYAP7
O-methyltransferase family protein {ECO:0000313|EMBL:BAP17581.1}; TaxID=1228987 species="Bacteria; Cyanobacteria.;" source="cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake; Yunoko.;"
O-methyltransferase family protein
scnpilot_solids2_trim150_scaffold_521_22
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20774..21517
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036154AA
Putative 3-oxoacyl-[ACP] reductase {ECO:0000313|EMBL:GAK44242.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_521_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21514..21816)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B667B3
Uncharacterized protein {ECO:0000313|EMBL:AHG88724.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
scnpilot_solids2_trim150_scaffold_521_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22122..23084
DNA (963bp) protein (321aa)
ABC transporter related n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSY4_PARL1 rbh
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein rbh
ABC transporter related {ECO:0000313|EMBL:ABS63017.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_521_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23081..23815
DNA (735bp) protein (245aa)
Cytochrome c-type biogenesis protein CcmB n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSY5_PARL1 rbh
cytochrome c-type biogenesis protein CcmB; K01992 ABC-2 type transport system permease protein rbh
Cytochrome c-type biogenesis protein CcmB {ECO:0000313|EMBL:ABS63018.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_521_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23819..25732
DNA (1914bp) protein (638aa)
ABC-type uncharacterized transport system involved in gliding motility auxiliary component protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSY6_PARL1 rbh
gliding motility ABC transporter auxiliary protein rbh
ABC-type uncharacterized transport system involved in gliding motility auxiliary component protein {ECO:0000313|EMBL:ABS63019.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_521_27
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25740..26807
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSY7_PARL1
Uncharacterized protein {ECO:0000313|EMBL:CDO59545.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_521_28
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26914..27957
DNA (1044bp) protein (348aa)
2Fe-2S ferredoxin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039B3289 rbh
Oxidase-related protein {ECO:0000313|EMBL:GAK45112.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Rieske [2Fe-2S] domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_521_29
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28079..31420
DNA (3342bp) protein (1114aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
carB; carbamoyl phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XG13_9RHIZ
scnpilot_solids2_trim150_scaffold_521_30
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31562..32038
DNA (477bp) protein (159aa)
transcription elongation factor GreA n=1 Tax=Novispirillum itersonii RepID=UPI0003655E4F
greA; transcription elongation factor GreA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
Displaying items 1-30 of 34 in total

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