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scnpilot_solids2_trim150_scaffold_832

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_832_1
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..436)
DNA (435bp) protein (145aa)
biotin--protein ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin-protein ligase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AQ03_9CAUL
Biotin--acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:GAK44555.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_832_2
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(433..1866)
DNA (1434bp) protein (478aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
proton-translocating NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00038035BA
scnpilot_solids2_trim150_scaffold_832_3
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1863..3395)
DNA (1533bp) protein (511aa)
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:ERP97850.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ERP97850.1};; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
proton-translocating NADH-quinone oxidoreductase, subunit M subfamily protein; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] rbh
NADH:ubiquinone oxidoreductase subunit M n=2 Tax=Labrenzia RepID=U7GI34_9RHOB rbh
scnpilot_solids2_trim150_scaffold_832_4
bacterium YEK0313, Bacteria

Not on your lists

comp(3392..5389)
DNA (1998bp) protein (666aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY38_PARL1
NADH-quinone oxidoreductase subunit L {ECO:0000313|EMBL:CEJ13212.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_832_5
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5397..5705)
DNA (309bp) protein (103aa)
nuoK; NADP ubiquinone oxidoreductase chain K; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G6T8_9BRAD
scnpilot_solids2_trim150_scaffold_832_6
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5706..6311)
DNA (606bp) protein (202aa)
NADH-ubiquinone oxidoreductase chain J (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase chain J n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VY47_9PROT
NADH:ubiquinone oxidoreductase, membrane subunit J {ECO:0000313|EMBL:CDX12863.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
scnpilot_solids2_trim150_scaffold_832_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6339..6827)
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
NADH dehydrogenase subunit I; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3]
NADH dehydrogenase subunit I n=1 Tax=Kaistia granuli RepID=UPI000375E63B
scnpilot_solids2_trim150_scaffold_832_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6834..7868)
DNA (1035bp) protein (345aa)
NADH dehydrogenase subunit H; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=NUOH_PARL1
scnpilot_solids2_trim150_scaffold_832_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7870..9999)
DNA (2130bp) protein (710aa)
NADH:ubiquinone oxidoreductase, subunit G; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH dehydrogenase subunit G n=1 Tax=Amorphus coralli RepID=UPI00035E7C06
NADH dehydrogenase subunit G {ECO:0000313|EMBL:GAK44563.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_832_10
unknown

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comp(9999..10436)
DNA (438bp) protein (146aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_832_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10442..11728)
DNA (1287bp) protein (429aa)
NADH dehydrogenase I subunit F; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] rbh
NADH dehydrogenase n=1 Tax=Novispirillum itersonii RepID=UPI0003789CA3 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_832_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11728..12399)
DNA (672bp) protein (224aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH-quinone oxidoreductase, E subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY45_PARL1
NADH-quinone oxidoreductase subunit E {ECO:0000313|EMBL:GAK44565.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_832_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12396..13583)
DNA (1188bp) protein (396aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NADH dehydrogenase I subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH dehydrogenase subunit D n=1 Tax=Robiginitomaculum antarcticum RepID=UPI00037A922A
scnpilot_solids2_trim150_scaffold_832_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13580..14191)
DNA (612bp) protein (204aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036C1C63
scnpilot_solids2_trim150_scaffold_832_15
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14201..14773)
DNA (573bp) protein (191aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
NADH-quinone oxidoreductase subunit B n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LL28_RHITR
nuoB; NADH-quinone oxidoreductase subunit b
scnpilot_solids2_trim150_scaffold_832_16
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14764..15129)
DNA (366bp) protein (122aa)
NAD(P)H-quinone oxidoreductase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.- {ECO:0000256|HAMAP-Rule:MF_01394};; NAD(P)H dehydrogenase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; NADH-plastoquinone oxidoreductase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit A n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY49_PARL1
scnpilot_solids2_trim150_scaffold_832_trna_3
unknown

Not on your lists

comp(15401..15474)
DNA (74bp)
transferRNA Asp
scnpilot_solids2_trim150_scaffold_832_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15546..16055)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037514F9
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29147.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
scnpilot_solids2_trim150_scaffold_832_trna_1
unknown

Not on your lists

16157..16229
DNA (73bp)
transferRNA Val
scnpilot_solids2_trim150_scaffold_832_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16355..16627)
DNA (273bp) protein (91aa)
Histone-like DNA-binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TM30_TISMK
histone-like DNA-binding protein
Histone-like DNA-binding protein {ECO:0000313|EMBL:AFK53818.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_solids2_trim150_scaffold_832_19
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16816..19239)
DNA (2424bp) protein (808aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
lon; ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] rbh
peptidase n=1 Tax=Elioraea tepidiphila RepID=UPI00037A5E36 rbh
scnpilot_solids2_trim150_scaffold_832_20
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19427..20692)
DNA (1266bp) protein (422aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QZC5_9RHIZ
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
clpX; ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
scnpilot_solids2_trim150_scaffold_832_21
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20929..21573)
DNA (645bp) protein (215aa)
clpP; ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CCC6_9RHOB
Tax=RBG_16_Alphaproteobacteria_64_48_curated
scnpilot_solids2_trim150_scaffold_832_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21656..23062)
DNA (1407bp) protein (469aa)
Trigger factor {ECO:0000255|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000255|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000255|HAMAP-Rule:MF_00303};; PPIase {ECO:0000255|HAMAP-Rule:MF_00303}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Trigger factor n=2 Tax=Parvibaculum RepID=TIG_PARL1 rbh
tig; trigger factor; K03545 trigger factor rbh
scnpilot_solids2_trim150_scaffold_832_trna_2
unknown

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comp(23117..23197)
DNA (81bp)
transferRNA Leu
scnpilot_solids2_trim150_scaffold_832_23
Marinomonas profundimaris, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23294..23797)
DNA (504bp) protein (168aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
UPI0003D5C471 related cluster n=1 Tax=unknown RepID=UPI0003D5C471
Phosphinothricin N-acetyltransferase {ECO:0000313|EMBL:ETI60702.1}; TaxID=1208321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas profundimaris.;"
scnpilot_solids2_trim150_scaffold_832_24
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23794..24720)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRC9_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05162.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_832_25

Not on your lists

comp(24759..25247)
DNA (489bp) protein (163aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=uncultured bacterium RepID=C5JB69_9BACT
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:CAX84012.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conserved protein of unknown function; putative Carbohydrate kinase domain
scnpilot_solids2_trim150_scaffold_832_26
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25244..25999)
DNA (756bp) protein (252aa)
GCN5-related N-acetyltransferase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDW1_BEII9
Uncharacterized protein {ECO:0000313|EMBL:KFG70045.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
N-acetyltransferase GCN5
scnpilot_solids2_trim150_scaffold_832_27
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26191..27597)
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI0003643856 rbh
amidase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Displaying items 1-30 of 81 in total

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