ggKbase home page

scnpilot_solids2_trim150_scaffold_44

Search features with annotation key words

Displaying items 1-30 of 283 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_44_1
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2781)
DNA (2781bp) protein (927aa)
TonB-dependent outer membrane receptor n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 RepID=D4SZ51_9XANT rbh
TonB-dependent outer membrane receptor {ECO:0000313|EMBL:EFF42534.1}; TaxID=427081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122.;"
TonB-dependent receptor
scnpilot_solids2_trim150_scaffold_44_2
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2795..7177)
DNA (4383bp) protein (1461aa)
serine/threonine protein kinase-related protein n=1 Tax=Schlesneria paludicola RepID=UPI00029ADE30 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN50767.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
WD40 repeat-containing protein
scnpilot_solids2_trim150_scaffold_44_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7180..7905)
DNA (726bp) protein (242aa)
RNA polymerase subunit sigma-24 n=1 Tax=Schlesneria paludicola RepID=UPI00029A77F8
Uncharacterized protein {ECO:0000313|EMBL:AKC86166.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
DNA-directed RNA polymerase subunit sigma24
scnpilot_solids2_trim150_scaffold_44_4
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(7971..8672)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003829158
Uncharacterized protein {ECO:0000313|EMBL:AKC83602.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
DNA-directed RNA polymerase subunit sigma24
scnpilot_solids2_trim150_scaffold_44_5
unknown

Not on your lists

comp(8884..9249)
DNA (366bp) protein (122aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_44_6
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9372..10022)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000368A5EC
Uncharacterized protein {ECO:0000313|EMBL:KGM55243.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_44_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10173..10949)
DNA (777bp) protein (259aa)
Protein serine/threonine phosphatase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLT4_9GAMM
protein serine/threonine phosphatase
Protein serine/threonine phosphatase {ECO:0000313|EMBL:AEM49246.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
scnpilot_solids2_trim150_scaffold_44_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11122..11994
DNA (873bp) protein (291aa)
GumN family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAW6_9GAMM
Polysaccharide biosynthesis protein GumN {ECO:0000313|EMBL:KGI77832.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_44_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12051..14294
DNA (2244bp) protein (748aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA topoisomerase IV subunit A (EC:5.99.1.3)
DNA topoisomerase 4 subunit A n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAW7_9GAMM
scnpilot_solids2_trim150_scaffold_44_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14388..14846
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYS6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89838.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_44_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14923..15207
DNA (285bp) protein (95aa)
Biotin/lipoate A/B protein ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZA8_9GAMM
Biotin/lipoate A/B protein ligase {ECO:0000313|EMBL:EIL92549.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_44_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15204..15980
DNA (777bp) protein (259aa)
Lipoate--protein ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZA9_9GAMM
Lipoate--protein ligase {ECO:0000313|EMBL:EIL92550.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
lipoate-protein ligase A
scnpilot_solids2_trim150_scaffold_44_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16156..18612
DNA (2457bp) protein (819aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B93DE
Peptidase S45 {ECO:0000313|EMBL:AHX14190.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
penicilin amidase
scnpilot_solids2_trim150_scaffold_44_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18664..19485
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FC9193
Uncharacterized protein {ECO:0000313|EMBL:AHX14189.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
putative periplasmic protein
scnpilot_solids2_trim150_scaffold_44_15
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19563..20108
DNA (546bp) protein (182aa)
Putative cytochrome b561 n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0STC2_9BRAD
Putative cytochrome b561 {ECO:0000313|EMBL:CCD97449.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
cytochrome B561
scnpilot_solids2_trim150_scaffold_44_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20119..20334
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3J6_9GAMM
putative periplasmic protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_44_17
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20503..20934
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZF2_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:KJV37290.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_44_18
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20927..21142
DNA (216bp) protein (72aa)
Helix-turn-helix family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X1R9_9SPHN
Putative Xre family DNA-binding protein {ECO:0000313|EMBL:GAM00889.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
XRE family transcriptional regulator; K07729 putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_44_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21365..21925
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4Q9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94450.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peroxiredoxin
scnpilot_solids2_trim150_scaffold_44_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21931..23067)
DNA (1137bp) protein (379aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
succinyl-diaminopimelate desuccinylase (EC:3.5.1.18)
Succinyl-diaminopimelate desuccinylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3H5_9GAMM
scnpilot_solids2_trim150_scaffold_44_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23117..24178)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIH2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87013.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_44_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24186..24539)
DNA (354bp) protein (118aa)
Spx/MgsR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIH0_9GAMM
Spx/MgsR family transcriptional regulator {ECO:0000313|EMBL:EIL87011.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator, Spx/MgsR family
scnpilot_solids2_trim150_scaffold_44_23
Chlorobaculum parvum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(24536..24988)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QMY3_CHLP8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF11286.1}; Flags: Precursor;; TaxID=517417 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp.; thiosulfatophilum (strain DSM 263 / NCIB 8327)).;"
scnpilot_solids2_trim150_scaffold_44_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25043..25993)
DNA (951bp) protein (317aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3H1_9GAMM
scnpilot_solids2_trim150_scaffold_44_25
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26095..28791)
DNA (2697bp) protein (899aa)
uridylyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000348446B
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
(protein-PII) uridylyltransferase
scnpilot_solids2_trim150_scaffold_44_26
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28936..29700)
DNA (765bp) protein (255aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Map n=1 Tax=Dyella japonica RepID=UPI00030A4D86
scnpilot_solids2_trim150_scaffold_44_27
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


30008..30853
DNA (846bp) protein (282aa)
30S ribosomal protein S2 n=1 Tax=Dyella ginsengisoli RepID=UPI00034BC6AD
30S ribosomal protein S2 {ECO:0000313|EMBL:GAN45943.1}; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribosomal protein S2
scnpilot_solids2_trim150_scaffold_44_28
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31212..32087
DNA (876bp) protein (292aa)
Elongation factor Ts n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRM7_PSEUU rbh
translation elongation factor Ts; K02357 elongation factor Ts rbh
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_solids2_trim150_scaffold_44_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32298..33020
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Uridylate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNP7_9GAMM
uridylate kinase
scnpilot_solids2_trim150_scaffold_44_30
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33056..37615)
DNA (4560bp) protein (1520aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHX8_GLUDA
outer membrane autotransporter
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:ACI52606.1}; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Displaying items 1-30 of 283 in total

View Taxonomy