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scnpilot_solids2_trim150_scaffold_128

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_128_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..693
DNA (693bp) protein (231aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-ACP reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W048_9GAMM
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:EIL92839.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_128_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(675..1088)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVK1_9GAMM
cupin 2 barrel domain-containing protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_128_3
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1148..2074)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037429BF
Uncharacterized protein {ECO:0000313|EMBL:AKF86645.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
beta-lactamase domain-containing protein
scnpilot_solids2_trim150_scaffold_128_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2792..4084)
DNA (1293bp) protein (431aa)
Argininosuccinate lyase {ECO:0000313|EMBL:EIM01586.1}; EC=4.3.2.1 {ECO:0000313|EMBL:EIM01586.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
argininosuccinate lyase n=1 Tax=Dyella ginsengisoli RepID=UPI0003458B22
argininosuccinate lyase
scnpilot_solids2_trim150_scaffold_128_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4190..5179)
DNA (990bp) protein (330aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|SAAS:SAAS00137393}; EC=1.2.1.38 {ECO:0000256|SAAS:SAAS00137393};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVK3_9GAMM
scnpilot_solids2_trim150_scaffold_128_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5179..6576)
DNA (1398bp) protein (466aa)
Acetylglutamate kinase {ECO:0000313|EMBL:EIM01584.1}; EC=2.7.2.8 {ECO:0000313|EMBL:EIM01584.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
N-acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ42_9GAMM
scnpilot_solids2_trim150_scaffold_128_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6601..7806)
DNA (1206bp) protein (402aa)
Acetylornithine deacetylase {ECO:0000313|EMBL:EIM03498.1}; EC=3.5.1.16 {ECO:0000313|EMBL:EIM03498.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase (EC:3.5.1.-)
Acetylornithine deacetylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVK6_9GAMM
scnpilot_solids2_trim150_scaffold_128_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7806..9047)
DNA (1242bp) protein (414aa)
Argininosuccinate synthase {ECO:0000256|SAAS:SAAS00214603}; EC=6.3.4.5 {ECO:0000256|SAAS:SAAS00009947};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNQ2_9GAMM
scnpilot_solids2_trim150_scaffold_128_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9106..9609)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTN0_9GAMM
putative redox protein, regulator of disulfide bond formation
Putative redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:AGG88359.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_128_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9606..10631)
DNA (1026bp) protein (342aa)
N-acetylornithine carbamoyltransferase {ECO:0000313|EMBL:EIM03502.1}; EC=2.1.3.9 {ECO:0000313|EMBL:EIM03502.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ornithine carbamoyltransferase (EC:2.1.3.9)
N-acetylornithine carbamoyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVL0_9GAMM
scnpilot_solids2_trim150_scaffold_128_11
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11029..11607)
DNA (579bp) protein (193aa)
Putative outer membrane lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNP8_9GAMM
Membrane protein {ECO:0000313|EMBL:KJV25404.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative outer membrane lipoprotein
scnpilot_solids2_trim150_scaffold_128_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11714..13117
DNA (1404bp) protein (468aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysteinyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI000361439A
scnpilot_solids2_trim150_scaffold_128_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13162..13599
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003608078
Fe-S cluster assembly protein SufE {ECO:0000313|EMBL:KGI78008.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SufE protein probably involved in Fe-S center assembly
scnpilot_solids2_trim150_scaffold_128_14

Not on your lists

comp(13681..14601)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DE4159
RNA polymerase-binding, DksA {ECO:0000313|EMBL:EQD28086.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNA polymerase-binding protein DksA
scnpilot_solids2_trim150_scaffold_128_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14723..14974
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQD2_9GAMM
Putative membrane protein insertion efficiency factor {ECO:0000256|SAAS:SAAS00100919}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_128_16
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14975..16309
DNA (1335bp) protein (445aa)
dihydroorotase, multifunctional complex type; K01465 dihydroorotase [EC:3.5.2.3]
dihydroorotase n=1 Tax=Dyella japonica RepID=UPI0002DF1F4E
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids2_trim150_scaffold_128_17
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16325..17251)
DNA (927bp) protein (309aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase n=1 Tax=Dyella japonica RepID=UPI0002D91439
scnpilot_solids2_trim150_scaffold_128_18
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17248..18096)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A4597
Phytoene synthase {ECO:0000313|EMBL:AHX12479.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
phytoene/squalene synthetase
scnpilot_solids2_trim150_scaffold_128_19
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18093..18815)
DNA (723bp) protein (241aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003479ED1
2-phosphoglycolate phosphatase
scnpilot_solids2_trim150_scaffold_128_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18755..19486)
DNA (732bp) protein (244aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVL9_9GAMM
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids2_trim150_scaffold_128_21
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19483..19767)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DYV9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIY43732.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_128_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19767..21098)
DNA (1332bp) protein (444aa)
N-ethylammeline chlorohydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVM1_9GAMM
N-ethylammeline chlorohydrolase {ECO:0000313|EMBL:EIM03513.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cytosine deaminase-like metal-dependent hydrolase
scnpilot_solids2_trim150_scaffold_128_23

Not on your lists

comp(21184..21750)
DNA (567bp) protein (189aa)
Translation elongation factor P n=2 Tax=mine drainage metagenome RepID=T1CG92_9ZZZZ rbh
Translation elongation factor P {ECO:0000313|EMBL:EQD65304.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
translation elongation factor P
scnpilot_solids2_trim150_scaffold_128_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21864..23027
DNA (1164bp) protein (388aa)
L-lysine 2,3-aminomutase (EC:5.4.3.2)
Lysine-2,3-aminomutase-related protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAF8_9GAMM rbh
Lysine-2,3-aminomutase-related protein {ECO:0000313|EMBL:EIL96449.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_128_25
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23209..25281
DNA (2073bp) protein (691aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEH3_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:KJV25336.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_128_26
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25373..26134
DNA (762bp) protein (254aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Dyella ginsengisoli RepID=UPI00034B1729
putative sugar kinase
scnpilot_solids2_trim150_scaffold_128_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26850..29861
DNA (3012bp) protein (1004aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4F2_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:EIL94343.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TonB-dependent receptor
scnpilot_solids2_trim150_scaffold_128_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29943..32522
DNA (2580bp) protein (860aa)
glycoside hydrolase family protein; K01188 beta-glucosidase [EC:3.2.1.21]
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4F1_9GAMM
Glycoside hydrolase family protein {ECO:0000313|EMBL:EIL94342.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_128_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32566..34053
DNA (1488bp) protein (496aa)
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH16_9GAMM
Glycoside hydrolase family protein {ECO:0000313|EMBL:EIL98757.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
O-glycosyl hydrolase
scnpilot_solids2_trim150_scaffold_128_30
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34144..39090)
DNA (4947bp) protein (1649aa)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2)
glutamate dehydrogenase n=1 Tax=Dyella japonica RepID=UPI00031A89A4
Glutamate dehydrogenase {ECO:0000313|EMBL:AHX12659.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Displaying items 1-30 of 150 in total

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