ggKbase home page

scnpilot_solids2_trim150_scaffold_170

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_170_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(198..578)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037EB6D3
Glyoxalase {ECO:0000313|EMBL:AIF47591.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_170_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(656..2335)
DNA (1680bp) protein (560aa)
aminopeptidase n=1 Tax=Dyella ginsengisoli RepID=UPI00034A12BC
Aminopeptidase {ECO:0000313|EMBL:GAN45059.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative aminopeptidase
scnpilot_solids2_trim150_scaffold_170_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2702..4498
DNA (1797bp) protein (599aa)
Coagulation factor 5/8 type domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE07_9GAMM
Coagulation factor 5/8 type domain-containing protein {ECO:0000313|EMBL:EIL97698.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
coagulation factor 5/8 type domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_170_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4535..7093)
DNA (2559bp) protein (853aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Pyruvate dehydrogenase E1 component n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE11_9GAMM
pyruvate dehydrogenase E1 component, homodimeric type
scnpilot_solids2_trim150_scaffold_170_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7183..9582)
DNA (2400bp) protein (800aa)
Bifunctional malic enzyme oxidoreductase/phosphotransacetylase {ECO:0000313|EMBL:EIL97703.1}; EC=1.1.1.40 {ECO:0000313|EMBL:EIL97703.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Bifunctional malic enzyme oxidoreductase/phosphotransacetylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE12_9GAMM
malic enzyme
scnpilot_solids2_trim150_scaffold_170_6
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9735..11429
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00036B8E78 rbh
Diguanylate cyclase {ECO:0000313|EMBL:GAN45499.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_170_7
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

11442..12245
DNA (804bp) protein (268aa)
amn; AMP nucleosidase (EC:3.2.2.4); K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase {ECO:0000313|EMBL:KIJ71558.1}; EC=3.2.2.4 {ECO:0000313|EMBL:KIJ71558.1};; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
AMP nucleosidase n=1 Tax=Leifsonia xyli subsp. xyli (strain CTCB07) RepID=Q6AF04_LEIXX
scnpilot_solids2_trim150_scaffold_170_8
Osedax symbiont Rs1, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12556..12993
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs1 RepID=S6HJI5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPJ45187.1}; TaxID=1330036 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_170_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13184..14650
DNA (1467bp) protein (489aa)
cytochrome oxidase subunit I n=1 Tax=Dyella ginsengisoli RepID=UPI000347200A
Cbb3-type cytochrome c oxidase subunit I {ECO:0000313|EMBL:EIM03787.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cytochrome c oxidase, cbb3-type, subunit I
scnpilot_solids2_trim150_scaffold_170_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14767..15426
DNA (660bp) protein (220aa)
Cbb3-type cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W724_9GAMM
Cbb3-type cytochrome c oxidase subunit II {ECO:0000313|EMBL:EIL95265.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c oxidase, cbb3-type, subunit II
scnpilot_solids2_trim150_scaffold_170_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15423..15617
DNA (195bp) protein (65aa)
Cytochrome c oxidase subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WWE3_9GAMM
Cbb3-type cytochrome oxidase component FixQ
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_170_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15614..16525
DNA (912bp) protein (304aa)
Cbb3-type cytochrome c oxidase subunit n=2 Tax=Rhodanobacter sp. 115 RepID=I4WWE2_9GAMM
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cytochrome c oxidase, cbb3-type, subunit III
scnpilot_solids2_trim150_scaffold_170_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16500..16721
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W721_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95262.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_170_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16718..18946
DNA (2229bp) protein (743aa)
Heavy metal translocating P-type ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WWE0_9GAMM
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EIM03782.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy metal translocating P-type ATPase
scnpilot_solids2_trim150_scaffold_170_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18943..19161
DNA (219bp) protein (73aa)
Cbb3-type cytochrome oxidase maturation protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WWD9_9GAMM
Cbb3-type cytochrome oxidase maturation protein {ECO:0000313|EMBL:EIM03781.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cytochrome oxidase maturation protein, cbb3-type
scnpilot_solids2_trim150_scaffold_170_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19349..20800
DNA (1452bp) protein (484aa)
Cytochrome-c oxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ51_9GAMM
Cytochrome-c oxidase {ECO:0000313|EMBL:EIM01593.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Cbb3-type cytochrome oxidase subunit 1
scnpilot_solids2_trim150_scaffold_170_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20797..21786
DNA (990bp) protein (330aa)
Cbb3-type cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTF0_9GAMM
Cbb3-type cytochrome c oxidase subunit II {ECO:0000313|EMBL:EIL90491.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Cbb3-type cytochrome oxidase, cytochrome c subunit
scnpilot_solids2_trim150_scaffold_170_18
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21797..21961
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QVC2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG63728.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
scnpilot_solids2_trim150_scaffold_170_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21973..22437
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTE9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90490.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_170_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22427..24274)
DNA (1848bp) protein (616aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BFA38 rbh
Potassium transporter TrkA {ECO:0000313|EMBL:GAN45349.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
di-/tricarboxylate transporter
scnpilot_solids2_trim150_scaffold_170_21
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24290..25267)
DNA (978bp) protein (326aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034CE504
scnpilot_solids2_trim150_scaffold_170_22
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25251..26066)
DNA (816bp) protein (272aa)
Thiazole synthase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQ93_PSEUU
thiazole biosynthesis protein; K03149 thiamine biosynthesis ThiG
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_170_23
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26306..26506)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000318E4BE
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:AIF46862.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein
scnpilot_solids2_trim150_scaffold_170_24
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26555..29059)
DNA (2505bp) protein (835aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DCF17E
Uncharacterized protein {ECO:0000313|EMBL:AHX15862.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
putative prolin-rich exported protein
scnpilot_solids2_trim150_scaffold_170_trna_1
unknown

Not on your lists

29259..29329
DNA (71bp)
transferRNA Gly
scnpilot_solids2_trim150_scaffold_170_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29514..30389
DNA (876bp) protein (292aa)
Probable alpha-L-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_01552}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_01552};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribosomal protein S6 modification protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B328C
alpha-L-glutamate ligase; K05844 ribosomal protein S6 modification protein
scnpilot_solids2_trim150_scaffold_170_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30544..31098
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E59E19
Uncharacterized protein {ECO:0000313|EMBL:AHX16484.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids2_trim150_scaffold_170_27
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31190..31588
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B977C
Uncharacterized protein {ECO:0000313|EMBL:GAN45341.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_170_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31585..33261
DNA (1677bp) protein (559aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034956A7 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHX16061.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
TonB domain/peptidase M56 domain-containing protein
scnpilot_solids2_trim150_scaffold_170_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33341..34027
DNA (687bp) protein (229aa)
XRE family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI0003478B5E
XRE family transcriptional regulator {ECO:0000313|EMBL:GAN45340.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Displaying items 1-30 of 87 in total

View Taxonomy